G734622


Basic Information

Item Value
gene id G734622
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64498232 ~ 64500952 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU834203
TTTGTTGGCAATGTTACTCTGCTAGGTAAAGACTGCAGAGGGGGGTTTTTGTCTGAATACAAAAACGTTTGAAAAAGATTATGATAATGATGAAAAAACATTGAGGTGGCAAATAATGAAAAACCAAATGATGTATAGGGTATTTTGAGCCAGGGAATGATGTCTGCTGTGGTGAGATACGAGTGGTTTTTGAAGGAAAGAAAACCTGTCATTCCAAAAAACACTGACGCACATAGTGTTGACTTACTGTTATACCTCGATCGTATTCCAAGGGTCAGCTTTAAACTTTTCCTGTTAAAAGGCCTCATGTGTGGAGGAGGTGGAATGCTGAACTTGGATGTGTCAGGTCCAGGAGCCAAGCCTAAATATGCCAGACTCATCAGGTACATACAGAGTCCTCCTCACATATCTCTCACATATTCTCTACCACCTTTCCTGAGTGTAGCCTGATCCATTTGTCTGGTATCTCCTATTTCTAGTGAAGGTACCATTCAAAAAGAGACcgatgtacagagagagagagagagagagagaccggttGCGGCAGATTGGTATTTGGATTCGATCACAGAAAGATGGATTGACTGGCCTGAGAGTGATACTGCCACTGTGGGTTTGGGTCTGTGAGGAGTGGCTTGTGTTGTCAGAGTTTGGGTTTATAACATGTGGAAATACCATTGCTGAAAAACATCTTGTATCTTTCAAAGCAAAACGTGTATGAACGTGTACTTTTTGACAACATGCCTTGGTGTAGCCGGTTGGGGTTAGTATTCCACATACAAGCCTAACCAGAACTATCAACCTCTCAGACCCTGTGGGGAAAGTTTTATATTAGCCATAGTATTATTGTTATACAAGCACTTCACAAATGTCATGTACTCTCGACACCATTCTGTCTGCTTGAGCAATTATTTATCGATCGTTAGAATCATCTGTGTGTGAATGAGTACTAGGAATACAAACAGCATAGCTATATTTAACATGCACAAATAGGAATATTAGACACAAACATTTGAGGATAAATGTTGAGGCTATGAAAAGCGTTCCATGTCAGCTTCCACATTCCAGGTGACCTCGGGCCACAGAAGTCCACCGTCTGTCTGGCGTAGTGCAGTAAAGAAACGACgacagaaaagagaaaagagatgCTCAACTCAGTTCTCAGGGAATCACTTaaagaaacaaaaacaacaaaaaaaaagtagtAGCATAAGCATTTAAGATATTGTAAATATGAAAGTGTCAATTAAGAAAATTGTAAAGTTATAATTATTTATGATaactgtgtgtttttgtttttgtgggATACTTGAATGTGTTGTGGGCTGGGAATGTGAGGGCAGTTAGATGAAAATACATTTCTCAGGTGCTCCTGTGTACATTTCTCTGAATTTTGAGTcggtttttttttttatttgtatgttttgtttagtttttgCAGTGTTTTCTAAGAGGAAGCATGTTATTTCGAAATTAGAAAAGCAGGCATACCATTATGAAAAGAAAGCAACCTGACTATGCAGAAACCACTTGGTGGTTTGGTCCCCTTCTCTGGAGTCACCCAGACGAATGTCTGAGGGGGGCTCGCCACTATCCTAAAGAGAACAGACGAGGCAAGACACGGCATGTTTGTATTTGTAAGTAGCCTGCACATGCTGCAAATTGGGACGGACGTTGCCTTTGACCAATTTAATGTACAATTTCTCTCTTTGGACTTAAGCCTTTAGTGTCTTCTCAAAGTACCCGTGTCAGCACTTGACATGGTAACGAGAGTTTAAGGAGAACAATGGtccaaaataaatgaaaataaaaaccCTGCATGCCCCACGCAAAATAAGGAACTGGCAGAGAATATGAGTGGGGGAGTCTGTTTTGCCAACCCCTATCGTCCTCCCTTGTATTTCTTCATGCTTTTAAGCCTATTCAGTTCACTTCACCTGAACGACCATGGCCATGCTCTTAACCATTCTCTACAACCCCTACGGAGCAGTTGACTTATTCtgctccttccttccatccatcgCTGGTCTTTATTCCTTCTCTTTTAAAAAGATTTAGTTAACTTCCTCCCAAACGTTAGTCACAGGATTCAGTAAGACTGCAGCACTGCCTGTACCAGTGCCATATGCACCACGACATAACACCTGCTTTCCAAACCAACCTACCAACCTACGGCAGCCTCCTCTGTTTTGTCATTCACTTAGCTGCCACAAATATTAACCACTACTTGAATCTGAGATTTGTGAGTTACAACGAGTGGACAAAACAAGATTGCAGTTTAATGTCAACCTGCCTGTTATATACACACGTCAAACAGCAAGCATTTTCTGTCGCTGAAGTAGTTGGTTCTACGGCATTGCAAAAAAAGTAGGAGGGAAACTCCTCTGGCTTTTAATTTCTCTCTCCCATACTCTGTGTCTGTGTTAACTGTACCAGTGTTTTGACCTGTCACTAGAATTTAGAAGGAAGTAATAATAATCACTGGTAGATTGTTCACTAGTTCATCTACGGTTtgattctttttttatttaagGGAAAGTGTTTGTTGCCTCTTTGTGCTActgatttataaaaaataaaaaaaggtatcCAGTATTTGTTGCCACAGAAGTATAGTTTATCAACAGTTTGTGCAACCTCTTGAGCTAATGTCTATAAAACAATTTATTACTATTTATGTAACGCTACTACCATTTTATATCATTTGTGTTGGAATCTCAG
>TU834202
AAACGTTTGAAAAAGATTATGATAATGATGAAAAAACATTGAGGTGGCAAATAATGAAAAACCAAATGATGTATAGGGTATTTTGAGCCAGGGAATGATGTCTGCTGTGGTGAGATACGAGTGGTTTTTGAAGGAAAGAAAACCTGTCATTCCAAAAAACACTGACGCACATAGTGTTGACTTACTGTTATACCTCGATCGTATTCCAAGGGTCAGCTTTAAACTTTTCCTGTTAAAAGGCCTCATGTGTGGAGGAGGTGGAATGCTGAACTTGGATGTGTCAGGTCCAGGAGCCAAGCCTAAATATGCCAGACTCATCAGGTACATACAGAGTCCTCCTCACATATCTCTCACATATTCTCTACCACCTTTCCTGAGTGTAGCCTGATCCATTTGTCTGGTATCTCCTATTTCTAGTGAAGGTACCATTCAAAAAGAGACcgatgtacagagagagagagagagagagagaccggttGCGGCAGATTGGTATTTGGATTCGATCACAGAAAGATGGATTGACTGGCCTGAGAGTGATACTGCCACTGTGGGTTTGGGTCTGTGAGGAGTGGCTTGTGTTGTCAGAGTTTGGGTTTATAACATGTGGAAATACCATTGCTGAAAAACATCTTGTATCTTTCAAAGCAAAACGTGTATGAACGTGTACTTTTTGACAACATGCCTTGGTGTAGCCGGTTGGGGTTAGTATTCCACATACAAGCCTAACCAGAACTATCAACCTCTCAGACCCTGTGGGGAAAGTTTTATATTAGCCATAGTATTATTGTTATACAAGCACTTCACAAATGTCATGTACTCTCGACACCATTCTGTCTGCTTGAGCAATTATTTATCGATCGTTAGAATCATCTGTGTGTGAATGAGTACTAGGAATACAAACAGCATAGCTATATTTAACATGCACAAATAGGAATATTAGACACAAACATTTGAGGATAAATGTTGAGGCTATGAAAAGCGTTCCATGTCAGCTTCCACATTCCAGGTGACCTCGGGCCACAGAAGTCCACCGTCTGTCTGGCGTAGTGCAGTAAAGAAACGACgacagaaaagagaaaagagatgCTCAACTCAGTTCTCAGGGAATCACTTaaagaaacaaaaacaacaaaaaaaaagtagtAGCATAAGCATTTAAGATATTGTAAATATGAAAGTGTCAATTAAGAAAATTGTAAAGTTATAATTATTTATGATaactgtgtgtttttgtttttgtgggATACTTGAATGTGTTGTGGGCTGGGAATGTGAGGGCAGTTAGATGAAAATACATTTCTCAGGTGCTCCTGTGTACATTTCTCTGAATTTTGAGTcggtttttttttttatttgtatgttttgtttagtttttgCAGTGTTTTCTAAGAGGAAGCATGTTATTTCGAAATTAGAAAAGCAGGCATACCATTATGAAAAGAAAGCAACCTGACTATGCAGAAACCACTTGGTGGTTTGGTCCCCTTCTCTGGAGTCACCCAGACGAATGTCTGAGGGGGGCTCGCCACTATCCTAAAGAGAACAGACGAGGCAAGACACGGCATGTTTGTATTTGTAAGTAGCCTGCACATGCTGCAAATTGGGACGGACGTTGCCTTTGACCAATTTAATGTACAATTTCTCTCTTTGGACTTAAGCCTTTAGTGTCTTCTCAAAGTACCCGTGTCAGCACTTGACATGGTAACGAGAGTTTAAGGAGAACAATGGtccaaaataaatgaaaataaaaaccCTGCATGCCCCACGCAAAATAAGGAACTGGCAGAGAATATGAGTGGGGGAGTCTGTTTTGCCAACCCCTATCGTCCTCCCTTGTATTTCTTCATGCTTTTAAGCCTATTCAGTTCACTTCACCTGAACGACCATGGCCATGCTCTTAACCATTCTCTACAACCCCTACGGAGCAGTTGACTTATTCtgctccttccttccatccatcgCTGGTCTTTATTCCTTCTCTTTTAAAAAGATTTAGTTAACTTCCTCCCAAACGTTAGTCACAGGATTCAGTAAGACTGCAGCACTGCCTGTACCAGTGCCATATGCACCACGACATAACACCTGCTTTCCAAACCAACCTACCAACCTACGGCAGCCTCCTCTGTTTTGTCATTCACTTAGCTGCCACAAATATTAACCACTACTTGAATCTGAGATTTGTGAGTTACAACGAGTGGACAAAACAAGATTGCAGTTTAATGTCAACCTGCCTGTTATATACACACGTCAAACAGCAAGCATTTTCTGTCGCTGAAGTAGTTGGTTCTACGGCATTGCAAAAAAAGTAGGAGGGAAACTCCTCTGGCTTTTAATTTCTCTCTCCCATACTCTGTGTCTGTGTTAACTGTACCAGTGTTTTGACCTGTCACTAGAATTTAGAAGGAAGTAATAATAATCACTGGTAGATTGTTCACTAGTTCATCTACGGTTtgattctttttttatttaagGGAAAGTGTTTGTTGCCTCTTTGTGCTActgatttataaaaaataaaaaaaggtatcCAGTATTTGTTGCCACAGAAGTATAGTTTATCAACAGTTTGTGCAACCTCTTGAGCTAATGTCTATAAAACAATTTATTACTATTTATGTAACGCTACTACCATTTTATATCATTTGTGTTGGAATCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU834203 False 2721 lncRNA 0.40 1 64498232 64500952
TU834202 True 2659 lncRNA 0.40 1 64498294 64500952

Neighbor

gene id symbol gene type direction distance location
zswim5 LOC106569256 coding upstream 82 64433105 ~ 64498150 (+)
elovl8a LOC106569295 coding upstream 139528 64351669 ~ 64358704 (+)
selenop2 LOC106569257 coding upstream 148351 64346751 ~ 64349881 (+)
LOC110530327 LOC106569258 coding upstream 154212 64341284 ~ 64344020 (+)
LOC110530325 LOC106569259 coding upstream 161687 64302481 ~ 64336545 (+)
LOC110530334 LOC106569251 coding downstream 46728 64546280 ~ 64551340 (+)
LOC118965544 NA coding downstream 97164 64598087 ~ 64599550 (+)
buc LOC106569294 coding downstream 140169 64641121 ~ 64644702 (+)
LOC110530338 LOC106569292 coding downstream 148606 64649558 ~ 64653472 (+)
LOC110530342 LOC106569247 coding downstream 165492 64666444 ~ 64667954 (+)
G734443 NA non-coding upstream 225223 64272706 ~ 64273009 (+)
G734408 NA non-coding upstream 253218 64244750 ~ 64245014 (+)
G734148 NA non-coding upstream 434041 64063988 ~ 64064191 (+)
G734143 NA non-coding upstream 443317 64054638 ~ 64054915 (+)
G734140 NA non-coding upstream 445580 64052331 ~ 64052652 (+)
G734642 NA non-coding downstream 1394 64502346 ~ 64502780 (+)
G734627 NA non-coding downstream 10606 64511558 ~ 64565673 (+)
G734660 NA non-coding downstream 70166 64571118 ~ 64571356 (+)
G734664 NA non-coding downstream 74743 64575695 ~ 64576076 (+)
G733571 LOC106569085 other upstream 949489 63547587 ~ 63548743 (+)
LOC110530316 LOC106569082 other upstream 1070565 63375496 ~ 63430577 (+)
LOC118965541 LOC106569076 other upstream 1293336 63188433 ~ 63206250 (+)
G732350 NA other upstream 1615284 62797701 ~ 62882948 (+)
G732052 NA other upstream 2094041 62402949 ~ 62404191 (+)
G734690 LOC106569249 other downstream 118088 64619040 ~ 64620007 (+)
LOC110530343 LOC106569291 other downstream 196361 64697289 ~ 64698526 (+)
G735047 NA other downstream 320663 64821615 ~ 64822045 (+)
G735064 NA other downstream 329672 64830624 ~ 64830903 (+)

Expression


Co-expression Network