G734627


Basic Information

Item Value
gene id G734627
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64511558 ~ 64565673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU834218
TCTGCAAATAAGTATTTTTATTGATACAGATCATTTGCATTTATTCAGGTTAATACAATCACGTGATGTCACACGTCAATATCTcattgcaaaaaaaacaaaaatacaacaaatatacatgaaataaatcattagtctcattatttctgtaattcagaaAATAACCCAAAAGATCAGCTGCTAAAATAAATCAATGTACCTTGAAATACAAAGAAAAATAGAAATGTAATAGATGAAAAGGTAAGCATCTGTACTGGTAAAATGTGTGATTGAATTCAACATGGCAAACAGATATGGCTAAAGTGATAATAAATACGTGGTAGAATGTCTATCTATTTTGTGCTGTTCAATGTGATATTCTACAGGTTTGATCAGAGTCAGTCAACAGTAAGCCATTTGTTATTCGATCATTTTCCGTGAAATGCTGAAATGCACAAGCAGGTCTATACTTCAATATGAAGTTGAGTTCATAGATTCATCTTTAGCTTGCCTAACAAATAAACAAGCAGTCAACTTGTCCGACAATATCTCTACTTCCGCTGAATAGCTGATATTGTTGCTGGTGGATTGACTATTTCATAATGAAACTAGCACATTGGCAGATTTTtgtacatcccaaatgacaccctatcccctacatagtgcactacttttggccagagccctattGGGACTCAACCATTGACTTCCTAGGGCTGCTGTTGGTACTGGCCCTCTGTGGCAGTGTAAAAGTCATCTAGGACACTCTGGATGTAGTCAAATGTAGGCCTGTCATCTGGCTTGCTCTTCCAACAACTGGTCATTATGTCATAGAGCTCGTTGGGACAGTTCTCAGGGCGGGGCATTCTATAACCTCTCTGCACTGAAGTCATCACCTCACCATTACTCATCCCTTGAAAAAGGAAAAAGGGAACAGAAAGATTCAGTGAGACGAAGCAGATACTCTGAAATGCAGGTCGACCCAAATTGAAAAAAAGCAAATGTGACCAATTCTTATTTCTGTGGGGAAAATGGTTGATCAATAGCgggaaaaatacaaataaaaaatacaaataaagtcAGCAGGTATTTGGTATTTCCTAACGCATCACAATAAATACCATCAAACCAAATACAGGGTCCTTCTGGAGAATACCACTCAATGATCTCATGCAATATCTGTCATTAACCAGCAGATGGCGATAAATATATATTAACGCCTATTATTCCGTTAATTCAAACTCTATATTTGGCATCATATCGTGGGGAAATCAGGCTTGAGTAGCTAGTCTTAAATATAAAAgtattgtgtgtgtttatgtgtataaGGTTGCATGTAATTACCTGGGTAAGGTATTTTTCCATAGGTAATGATTTCATACAGGAGGACTCCAAAGGACCACATGTCTGATTTGATAGTGAAGGATCCATAGTTGATGGCCTCTGGTGCTGTCCACTTGATGGGAAACTTTGCACCTGTAATGGGCAAACACTCACATATTCAGAGGACGGAATAGTTTGACACTTATCTGCCTAACCAACCAAGGTACAATTATATACACTAGTACATGTTTGGACTGCTGACAGAAGCATTCTTGTACAAAGCAATATGCAATGATAACCAGTTTGCTTCGAGCATGTTTACATTGCTGAAATGTACCTCTACTTCCTCATTGGCataacaaaaaacaaacacactATGCAAAGCCTGATCCAAGTCCCTTAGATAAACATCAACATCATGTCCCTCAGCGGTACTGGTCTCTACAGATACGATCTTACAAAATATACACAATTACACTACTGAAATAACTCTAGAGAGCAACAGGGAATTTCTCTATACTGTCTTGCTCAGCCAAAGATGTGACACTAGACAAATCGTTTTGGGAAAAACTCATGATGCATAATTAATCAGTCATGAATGTTATCACATGAATCACACATATGTATAACAGTATGGCCAAAGTACAGTATTAATATTGTACTAACTAATTATAGCATGCACAGACGGAAGGCTCACCCTCTCTGGCTGTGTACTGGTCATCTTCTATAACTCTAGCAAGGCCAAAGTCAGCTATTTTACACAGCAAACTCTCAGACACCAGGACATTGGCTGTTCTCAGGTCACGGTGGATGTAGTTCTTCTTCTCAATGTAAGCCATTCCCTCCGCAATCTGAAAATTGATGAAAGTTCCCCTCAGAGATTAATAAAGTACCTAAAGTACCTATCTATCTGAGATGAAACTCAATTCAGCATTCGACCCAAATTAGTAAAACCTTCCGACTGACTTGTGTCGTTTCGTTCCCATAAAACAGTACTGAAAATGCTCAATAACTAGACTTCTCTCCTGACAAAAATTCAGTATGGCAAATGTGCAATGCTGCACAACATgcaccacatgaccaaaagtctgtggacacctgctcgtcaaacatctcattccccgttctgccagtcacattctctTAAAGTTCCCCAAAGCACatacatccctgggtcgctcctcttttcagttcgctgcaactAGTGACTGgcacgagctgcaaaaaacactcaaactggactgtttttttctccatctcttcattcaaagactcaatcgtggacactcttactgactgttgtggctgcttcgcgtgatatattgttgcctctaccttctttccatttgtgctgttgtctctgcccaataatgtttctaccatgttttgtgctgctaccatgttgttctgctgccatgttgggttgctaccatgctgtgttttcatgtgttgctgccatgctatgttgttgtcttaggtctcgctttatgtagtgttgcggtgtctctcttgtcgtgatgtgtgttttgtcctatatatatttttttaaataaaaaaaatgaatccCTGTCCACGCAAGAGGCTTTTTACCTCTTGGTAGACCACcactgtaaataataatttgttcttaactgacttgcctagttaaataatggttttACTTATATCTATAAcattctccactcttctggggacTTTTTctgctagatgttggaacatttctgcggggacttgcttccattaagCCACCAGCCGATGCTAGGCATTGtatatggtgatcttaggcttgtgtgtggctgctcggccatggaaacctatttcatgaagctcccgacgaacagttattgtgctgacgttgcttccagtggcagtttggaactcggtagtgagtgttacaaccgaggacaggtgatttttacgcgctacaaaCTTCAGCACTCTGTGGTCCCGTTCCGTGAGCTTGTGAggcacttcgcggctgagcctttgttgctcttagacgtttccacttcgcaataacagcacttacagttgaccggggcagctctagcagggcagaattctgatgactgacttgttggaaaggtggcatcctatgacggtgccatgttgaaagtctctgagctcttcagtaaggccattctactgccaatgtgtgtctatggagattgcatggctgtgtgctcgatttgatacacctgtcagcaacgggtgtggctgaaatagccgaatccactcatttgaagggatgtccacatacctttgtatacaTAGTGTAGTTAAGGTttgtattttacctcttggtaGAATTGAATTAGCTACCAACCATTTGACTTGGTTATTACTAAACAGGTTTAAGTGAGCTGGCTGAGTCCATTCTGGGAAAGAGTTGATCTGGTAATCAGACAATTGTTTCATTTCCCCAACTGCATCCTCTTTCACTTTGTCTAACACGTTGTGCAACTGTGGCTAGATGCAGTTTTCCCAAGCCTGAACTGACCACACCTCTCCGTCAATCCACAAAGACCTGATTAAAGTTCATTAGGAATTTCTTTTGAACTAATTAGTATCTCAAGTGTACTGACCTACATGGGATGAGGTGTATTCCGTTCAAAATGTGTGACCTTTTTTTAGGTAGTTTACTTCTTTGGGGAGGCATGTTATCAATGGTACCATATGAATCATCATTTTGTGTATTGAATGTTTAGTTGAATCACATTTCTTATACTTCCATGAGACGCATACTTTAATAGGCGTGTTTGAGGCACCACTGGATGGTCTTCACTTGTCACTTCTATGTTCTTAGTTTGTTGCAACTCATTTGGAAAGTGCGTCACCAAATAGTATTTAGTTGCTATTCCTCTTTCTGGTTTACCAATGGAAAAACTGACATCATCATCTATTTCTTAAGTGGAAATGTCTGTAAAGTTGAGCAATAATCTTAATCCTTGTGACATATAGAGACGTAAGAAGAACATGCATTACCTGTGCAGAGAAATCGATGAGCTTAGGTAGCTGAACTTTGCAGCCTACCTCACTTTTTAGGAAATCTAAGAGGCTACCTAAAAAAAGGaaataaacaaaatggaggaATAGAAACCAAACCAATGAAAATGTGCAGAGGTGACTTACAGAACACTTATATAACTTATGTAACATCAAATGGTGTGTATTGATGAAAACATGTCGGCAAAATGATTAGGAATTGGACTTGAAGGGTGTTTTACCATTGGACATGTACTCTGTGATGATGTAGATAGGCTCGACCTTGGTGACGACGGCGTAGAGGCGCACCAGTCTGTCGTGTTGCAGGGTCTTCATCAGGTTAGCCTCCTCCATGAAGGCCTCAGCTGACATGGTGCCTGGCTTCAGTGTCTTCACTGCCACCTTAGTCGTGTTGTTGTAGAACGCTGCAACAAGGAGGGATTTACACAGTATGAAGTATTTAAAAATGTCTTCTGACCTCTAGGGCTACctactgtatttttttgtctttttaTTTGAATGACATTTTGATTGGAAGATTTCACATAAACAGGTGACAGTCATTGCATGCAGTTTCACACGATTAAGCAACAAGGGAACCAATGGCAGTGACATAGAGTAGTGAAGCGCAGTTCATACTCAATAAATAGAACGAAGGAATTAAGCTGTAACAGTTCAGAAAAAAACTGTTTGTTTGAGAGAGCTAAAAGTAGACAGCAGGAGCCTTGAGACAGATACATTTTCATGTTTCAGCTTCACTGCCCTCTGAACAAACATCAACTGTAAGACGCCTCAGGGGAATGATGATAGAACTGCTAGAGAGACCATTGATTCAAAACAATAACTCTAAGTGTACGCCCCAAATGACAGCATATTCCCaatatagtgcactacttttgaccaaagccctattgagctctctgctgccaatgactggaacgaattacaaaaatcactgaagttggagacttatatctccctcactaacttcaagcatcggctgtcagagcagcctACCAATcgttgcagctgtacacagcccatctgtacatagcccattcatacaaccaactacctacctcatccccatatttgttttttgtctatttctgctctttgcacaccagtatttctacttgcacatcctcatttgcacatctatcacacAGTGTTaattactaaattgtaattacttcgccactatggcctatttattgccttacctccttacttcgtttgcacacactgtatacagatttttctattgtgttattgactgtacgtttgtttactgtatgtgtaactctgtgttgttgtttttgtcgcactgctttgctttatcttggccaggtcgcagttataaatgagaacttgttctaaactggcctgcctggttaaataaagttaaattaaaacatttttaaaaaaagagCAGCCCACAATATAGGGAACGGTGATTATACAATGATGCGGTTGGTTGATACATAATGAAGACGGCTTCCTATTAACACAACGAGCAGCAGAATGGGATGTCACCATCCGACCACTAATAAACCATGCTATTCAATCATGTGCAAATGAAAAGTGAGGAACAGTCGTTATTACGGGGCATGACAGCTACTTAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU834218 True 5912 lncRNA 0.40 2 64511558 64565673

Neighbor

gene id symbol gene type direction distance location
zswim5 LOC106569256 coding upstream 13408 64433105 ~ 64498150 (+)
elovl8a LOC106569295 coding upstream 152854 64351669 ~ 64358704 (+)
selenop2 LOC106569257 coding upstream 161677 64346751 ~ 64349881 (+)
LOC110530327 LOC106569258 coding upstream 167538 64341284 ~ 64344020 (+)
LOC110530325 LOC106569259 coding upstream 175013 64302481 ~ 64336545 (+)
LOC118965544 NA coding downstream 32443 64598087 ~ 64599550 (+)
buc LOC106569294 coding downstream 75448 64641121 ~ 64644702 (+)
LOC110530338 LOC106569292 coding downstream 83885 64649558 ~ 64653472 (+)
LOC110530342 LOC106569247 coding downstream 100771 64666444 ~ 64667954 (+)
LOC110530343 LOC106569291 coding downstream 131616 64697289 ~ 64698526 (+)
G734642 NA non-coding upstream 8778 64502346 ~ 64502780 (+)
G734622 NA non-coding upstream 10606 64498232 ~ 64500952 (+)
G734443 NA non-coding upstream 238549 64272706 ~ 64273009 (+)
G734408 NA non-coding upstream 266544 64244750 ~ 64245014 (+)
G734148 NA non-coding upstream 447367 64063988 ~ 64064191 (+)
G734660 NA non-coding downstream 5445 64571118 ~ 64571356 (+)
G734664 NA non-coding downstream 10022 64575695 ~ 64576076 (+)
G734674 NA non-coding downstream 24445 64590118 ~ 64590423 (+)
G734681 NA non-coding downstream 35878 64601551 ~ 64601856 (+)
G733571 LOC106569085 other upstream 962815 63547587 ~ 63548743 (+)
LOC110530316 LOC106569082 other upstream 1083891 63375496 ~ 63430577 (+)
LOC118965541 LOC106569076 other upstream 1306662 63188433 ~ 63206250 (+)
G732350 NA other upstream 1628610 62797701 ~ 62882948 (+)
G732052 NA other upstream 2107367 62402949 ~ 62404191 (+)
G734690 LOC106569249 other downstream 53367 64619040 ~ 64620007 (+)
G735047 NA other downstream 255942 64821615 ~ 64822045 (+)
G735064 NA other downstream 264951 64830624 ~ 64830903 (+)
si:ch211-207d6.2 kiaa1217 other downstream 759262 65300995 ~ 65386540 (+)

Expression


Co-expression Network