XLOC_002636 (adamts6)


Basic Information

Item Value
gene id XLOC_002636
gene name adamts6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11593998 ~ 11764439 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004902
ATGGAAATTTTTTGGAAGACGCTGACTTGGATATTTAGCCTGGTTTTGGCCGCTGCTGAAGCTCAGATCCTTTCGTACAACTCTCAAGcggaATTCCTGTCCACGCTGGAGCACTATCAGCTAACAGTACCAGTGCGGGTGAACGAGAAGGGCCAGTTCATGAGTTACACTGTGAAGCATTACAGGCCTGGACGGCGGCGACGTGGACTGGACCAGACTGAGCTGGACCACACCGAAACCAGGCTTTTTTACAAACTCTCAGCCTATGGAAAGCACTTTCACCTGAACCTGACACTCAACCCCAACCTGGTTTCTAAACATTTCACGGTAGAATACTGGGGCAAAGATGGACTAGACTGGCAGCATTCAGTGGTCGATAACTGCCACTATGTTGGATACCTATTGGATCAATATAGCACTACAAAAGTGGCACTGAGCAACTGCAAAGGCTTGCATGGTGTCATAACCACAGAGGATGAGCAATATTTAATAGAGCCATTAAAAAACATATCCAGAAATTTCAGTGATGTCAACCACGAAGGACAACCACATGTTATTTATAAAAAGACATCTATTCCTTCTCCACAAGAGCCGAGCAAGGAGTTCAGCTGTGGTGTTTCAGACCTCACAGTGAACAGAACACAATTCTACAATACCAATCCTAAATTAAACCCAGACTTCCCAGTCCTAGGTGTCGACAGTTTAATGGGTGCCCACCGTCAGCGCCGTTCTGTCAGTTCTGAACGCTTTGTGGAAACTCTAGTCGTGGCTGACAAAATGATGGTTGGCTACCACGGGCGCAAAGACATTGAGCACTACATACTGTCTGTTATGAACATTGTTGCCAAACTTTACCGTGATGCCAGTCTTGGAAACGTTGTGAACATAATTGTAACTCGACTGATTGTTCTGACAGAAGATCAGCCCAACTTGGAGATAAACCATCATGCAGACAAATCTCTAGACAGCTTCTGTAAATGGCAGAAATCCATTCTTTCTCATCAGGGAGATGGAAACAGTATCCCGGAGAACGGGATCGCCCATCACGACAATGCTGTTCTCATTACAAGGTATGACATCTGCACCTACAAGAACAAACCCTGCGGTACCCTTGgttTGGCATCCGTTGCAGGAATGTGCGAGCCTGAGAGGAGCTGCAGCATTAATGAAGATATAGGTCTCGGTTCAGCCTTCACTATTGCACATGAGATTGGACACAACTTCGGCATGAATCATGACGGGATCGGGAACTCCTGCGGGACTAAAGGTCATGAGACAGCCAAGCTGATGGCTGCCCATATCACTGCCAACACCAACCCCTTCTCCTGGTCGGCCTGCAGCAAGGACTACATTACCAGCTTTCTGGACTCAGGTCGGGGAACGTGTCTGGACAATGAGCCTCTAAAACGAGACTTCCTGTACCCCACTGTGGCTCCAGGGCAGGTGTACGATGCAGACGAGCAATGTCGTTTCCAGTACGGAGCCTCCTCCCGCCAGTGCAAGTATGGGGAAGTGTGTAGAGAGCTCTGGTGCCTTAGCAAAAGTAACCGCTGTGTCACCAACAGTATCCCTGCCGCAGAAGGAACCCTGTGCCAGACTAACACTATTGAAAAAGGGTGGTGTTATCAGGGTGAATGTGTGGCGTTTGGGACATGGCCGCAGAGTGTGGATGGCAGCTGGGGCCCGTGGACAGTCTGGGGTGAGTGCAGTCGAACCTGCGGCGGTGGCGTCTCCTCGTCCATGCGACACTGTGACAGCCCAGCGCCGTCAGGCGGAGGGAAGTACTGTCTCGGAGAGAGGAAGCGCTACAGATCGTGCAACACAGATGCTTGTCCAGAAGGATCACGTGACTTTAGGGAGAAGCAGTGTGCCGATTTTGACAGCCTGCCTTTCCGTGGGAAGTACTACAACTGGAAGCCGTACACTGGAGGTGGAGTGAAACCGTGTGCTTTGAACTGTCTGGCTGAAGGCTATAACTTCTACACTGAGCGCTCGCCTGCTGTCATTGATGGCACGCGCTGCCAAGGTGACTCGCTGGACATCTGCATCAACGGAGAGTGCAAGCATGTTGGCTGTGATAATATATTGGGCTCAGATGCCAAGGAGGACAGATGCCGTGTGTGTGGAGGAGACGGCAGCACGTGTGAGCTCACCGAAGGCCTTTTCAACGACTCACTGCCCAGAGGAGGTTACATGGAGGTCGTCCAGATACCAAAAGGGTCGGTTCACATTGAAATCAGAGAAGTGGCCGTGTCAAAGAACTACATTGCTTTGAAATCGGAGGGAGATGACTATTACATCAATGGAGCCTGGACCATTGACTGGCCTCGCAAGTTTGACATTGCAGGAACAGCCTTTCACTACAAGAGGCCGACTGATGAACCTGAATCACTTGAAGCTCTAGGGGCCACCATGGAAAATTTGGTGGTTATGGTGTTACTACAGGAACAAAACCTGGGCATTCAGTACAAGTTCAATGTGCCCATCCAGCGTACAGGAAGTGGGGACAACGAAGTGGGCTTCTCCTGGCACCATCTGCCCTGGTCTGAGTGCTCTGCTACATGTGCAGGAGGCTCGCAGAAGCAGGAGGTGGTGTGTAAAAGACTAGATGACAATTCGGTGGTCCAAAACAGCTACTGCGATCAGGACAGCAAACCGCCGGGGAACCAGAGAAGGTGTAACACTGAACCATGCCCTCCAGAATGGTTTATCGGCGACTGGTCAGAATGTGGAAAAACCTGTGATGGAGGGATCCGGACACGTACTGTTCTGTGTATCCGTAAAATCAACCCTGCCGAAGAGGAGACACTGGAAGACAGCCACTGTCTGACTCATCGACCAATAGAACAAGAGTCTTGCAACAACCAGTCCTGCCCACCTCAGTGGGTGACGCTGGATTGGTCAGAGTGCACTCCGAAATGTGGTCCTGGTTTCAAGCATCGTATTGTCCTGTGTAAAAGCAGTGACCTGACCAAAACCTTCCCAGCAGCTCTCTGTTCTGACCATAGCAAACCTCCGGTCCGCATTCGCTGCAGCCTCGGCCGGTGTCCTCCACCACGCTGGATCCCTGGAGAATGGGGACAGtgcTCTGCTCAGTGTGGACTAGGACAGCAGATGCGAACAGTTCAGTGTTTGTCTTACACGGGACAGCCCTCAAGCGAATGTCTGGACTCACTGCGGCCCAACACTATGCAGCAGTGTGAAAGCAAGTGTGATTCCACACCCATCTCTGGTGGCGACGAGTGCAAAGACGTAAATAAGGTGGCATATTGCCCACTGGTGCTGAAGTTCAAGTTCTGCAGCCGTGCGTACTTCAGGCAGATGTGCTGCAAGACGTGCCAAGGACACTGA
>TCONS_00004903
TTTTTCCCCTGTACAAGGACTGCATTTGTTGGCATGAGAGATAAAGAGAATGGCTTGAAGCTAAAGGAGAGATTTACTGAAGAATGCACTGAAGTGGATTTCAAATGAAGAGTTCTACTGTCTGCAAAATATGAAGACGcGGTCAGTGTAATAGTGTTGGGCAGTTGCCAGCTGTCTGGGTCAGACACGTTTTAGACTCGAGCTGCTGTCTGGAAGAAGCCGCTTTATACTCATGAATGTTCGTCTGCACAGTTGCCGCTTCAGCTTCTGCTGGCAAGCAAATGGATAGTTCGGCACAAGTTCCTAATATAGATCTGCTGCTCTGGAATAACATGAAGGGAGTCGTTATGGATTCTTGCCCTGCTCATGGCTGACAAAGATGCAGGCTTGAGTCCTTCCTTGAGACTTCACCTTTAGGAAGACTTCTAAACCTGGAATTAACTGTGGACTTGGGATTCTAGTGTATCGAGGATGCTTGTCACGGGTGTGTTATGGTGCGAAGCTGGATTGACCGTATCGCTTTAATCCACTTGTAGCCTCCCCCTACCCCCACCCCATGTCAGATCTTCCCTAAATTATGGAAATTTTTTGGAAGACGCTGACTTGGATATTTAGCCTGGTTTTGGCCGCTGCTGAAGCTCAGATCCTTTCGTACAACTCTCAAGGTAAGCTTAATAATGTGTGGATAAGAACAGAAAGATGACTGTTGCTGTAACAGCTGATGTCATAGCAGTTCTAAAAATTCAACAAGCCATAACTCATTTTGGCTCACACTGATGTCATTAAGACACTTTCAACTCTACCCAGAGGAAACTTTCATTGCTCAGTAATGCTTCATGCAAGCTTGTTTTCTAAAAGTCTTTTATAAAGAAATTTAAGCTGAGaaacaaatgaaaattttgtTGACCTCCATAAATGAAGGTTAAGTCTGGGTCACTAGGTAAACTGAATTCTGGTTATCTTGTGTCAAGTTTTAGACTGCTCTTTACCTGAGTTAACAGTTAATCCTAGGAATTCATACCCTTACGTTTCACTTTCTGTAATTTTTAACCCTTGGTTAATGTCCTTCAATGCGTATTTGCAATGTCAGCAACACTGATTGGATGAACACAGCAGGCAACTTGT

Function

symbol description
adamts6 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Orthologous to human ADAMTS6 (ADAM metallopeptidase with thrombospondin type 1 motif 6).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-091113-9 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including digestive system; eye; heart; pleuroperitoneal region; and thymus. Orthologous to human ADAMTS6 (ADAM metallopeptidase with thrombospondin type 1 motif 6).

Ensembl:

ensembl_id ENSDARG00000041982 ENSDARG00000093073

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004902 False 3351 mRNA 0.51 24 11593998 11761927
TCONS_00004903 True 1125 processed_transcript 0.42 3 11761380 11764439

Neighbor

gene id symbol gene type direction distance location
XLOC_002635 srek1ip1 coding downstream 196408 11394528 ~ 11397590 (-)
XLOC_002634 plac8.1 coding downstream 208843 11382365 ~ 11385155 (-)
XLOC_002633 plac8.2 coding downstream 217507 11371961 ~ 11376491 (-)
XLOC_002632 lin54 coding downstream 240529 11324515 ~ 11353469 (-)
XLOC_002631 inip coding downstream 270864 11319971 ~ 11323134 (-)
XLOC_002637 trim23 coding upstream 26442 11790881 ~ 11840353 (-)
XLOC_002638 NA coding upstream 130934 11895373 ~ 11898575 (-)
XLOC_002639 CT990561.2 coding upstream 883991 12648430 ~ 12652512 (-)
XLOC_002640 musk coding upstream 1315653 13080092 ~ 13179077 (-)
XLOC_002641 si:busm1-57f23.1 coding upstream 1471661 13236100 ~ 13239367 (-)
XLOC_002626 NA non-coding downstream 806349 10784334 ~ 10787649 (-)
XLOC_002625 NA non-coding downstream 879771 10712178 ~ 10714227 (-)
XLOC_002623 BX323065.1 non-coding downstream 1261571 10319308 ~ 10332427 (-)
XLOC_002621 NA non-coding downstream 1305315 10261345 ~ 10288683 (-)
XLOC_002642 NA non-coding upstream 1534400 13298839 ~ 13301973 (-)
XLOC_002643 CR759894.1 non-coding upstream 1540626 13305065 ~ 13305183 (-)
XLOC_002646 BX293994.2 non-coding upstream 1842588 13607027 ~ 13607143 (-)
XLOC_002647 BX293994.1 non-coding upstream 1847694 13612133 ~ 13612248 (-)

Expression


Co-expression Network