G735303 (LOC100135827)


Basic Information

Item Value
gene id G735303
gene name LOC100135827
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65058158 ~ 65142590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU834976
tttgagagaatgccaagagtgtgcaaaggtgtcatcaaggcaaaggaaggtgtcacgccctgaccttagataccTGTTTTCTacatattttggttaggtcagggtgtgactggggtGAGTACTCTagtttttttgtatgtctagggggttttgtatgtctaggttttttgaatgtctaggggttttgtatgtctatgttggcctgatatagttcccaatcagagacagctGTACAGTTATGCCATTTATTTCACTGATCAAATTCCCATCCATCAAATTTGACATGAACGAATCACACAAACCTTCCATTCCCATTTTAACATTAATTATAcgcaaggcttaaaaatcattccaggtatttccaaaaacatttaaaacatactTCAAGATTACATTTTtcaatataacatttatttaaataaaaCTAAAACACACATTACTCTAGTCCCTCAGTCAGTGATTTCTTTCAATGGATGGACTTGGATGATATGACATCTCACACAACATCTTCTTTCACTCTCATGATTTTAAGACACAATGTTAATGCACTGGGGTAGGTAGTAAGTTATGAGTCGTTAAAAAAATAATCACTTGAATTGGATCTCTTCTTTTCAGTATTGACCTGTAATCTAAAGTAAAAACACTGATGACGATTTAGAGACACAATCCAAAAATTGAAGGCATGTAATTCAAGATTCCATCTCTCCTTGTGCTTATTGAGAGTAGAAGCCCAGTAGTATTATACTATAAAAGGCCTCTATCTCTGACGGGCTGACTGACTGAGTCAGTCGTCTCTTATTGCAGTGAC
>TU834978
TGTAGGTACAGTTATGCCATTTATTTCACTGATCAAATTCCCATCCATCAAATTTGACATGAACGAATCACACAAACCTTCCATTCCCATTTTAACATTAATTATAcgcaaggcttaaaaatcattccaggtatttccaaaaacatttaaaacatactTCAAGATTACATTTTtcaatataacatttatttaaataaaaCTAAAACACACATTACTCTAGTCCCTCAGTCAGTGATTTCTTTCAATGGATGGACTTGGATGATATGACATCTCACACAACATCTTCTTTCACTCTCATGATTTTAAGACACAATGTTAATGCACTGGGGTAGGTAGTAAGTTATGAGTCGTTAAAAAAATAATCACTTGAATTGGATCTCTTCTTTTCAGTATTGACCTGTAATCTAAAGTAAAAACACTGATGACGATTTAGAGACACAATCCAAAAATTGAAGGCATGTAATTCAAGATTCCATCTCTCCTTGTGCTTATTGAGAGTAGAAGCCCAGTAGTATTATACTATAAAAGGCCTCTATCTCTGACGGGCTGACTGACTGAGTCAGTCGTCTCTTATTGCAGTGACAGGCAGCTAAATGACGTTAATCTGGGGTGATCCTGAGGTTTATCGtcagggattacaggaggggcaggcaggccaggCGTATAAAGTGCTGTCCATCCATATCGGCACAATAATCTCATCTACACTGGCTCTTGTTATTAAACTGCAttggtttaggtttaggtttccTTTCTGTTTTCTGATTACTGATTGTATTGTCTATAGGGTTAACAATCTGCAGATTCTGATCGCAATGCATATAAAATggcacacaatatatatataatctaggGGAAAGGTTGGGGATCGGCAATGGTGGGATGGGGGATGGCGTGATGCATAGCTGTTTACTTGAAGGACCGGCGGACCTTGCGTCCCTTGAGAGGCTGAGGGGGCCGGTAGTTGTCCTGCATGCAGCAAGGTGCCTCTCCATCACCACTGAACATTAAGCTGCGGAATTTACCcatctGGTAGGGCTGACACTGATCGGTTCCTTCAGGACGATCCAGGTGACACTCTCCAGCAGAGGGGGAGTGGTCAGGGAGCCATCATATGTCCAGTAGTCCAGTGAGCAAGGCAACAGAGTTTTGGCATCAAAGTTGGAAAATGTAGTTTGCTTTCCCTAAAGAATGTACAAATTGTGATTGAATACACAATGAATAAACAAAGTCTTACTTCAACATTCCCAACCAATTCTAGTCATTCGAGGCAAGATTTCTAAATCTAAATACCATTTAAGATCAATTTGATTTCACCTTTGATTTGATGGCCCCCAGAGCATCGAGAACCTTCTGCAGTCTGGGGTTTGCAGCACCAATCTATAAGAAACAAGAATTCACACAGCCATCCAAGGGAATCAGgctactttcagaatgcacttaGAGGGAAACAAATAAACAGTGTATGAACAATCTGCACCTTCAGAAACACTCCAACCACAGCGAGTCCATCGGGTTCACTAGCGGCCTCACCAAAGCTAGGGTACTTGGTGTTCCAGTGCACCAGATGGAGCTTGAAAAAACAAAGTCAGGTTTAGCTCAGGTAGCCAATGAAAATTCTGATCTGAATCCATACGGCTTGTCCTGTTGTATAATCTAGGTCTAGGACTGCCTACCTCACAGGGGAACTTGATTCCATTGACGGTGTGCTCAGAGCCCCTGTCGTCACTGGCGCCCCAGTGGAAGTGGAACTGCTTCAGCCTGTATATGCCAGTGATGGGGCCTCCGGTCAGTGTTGAACTGTCAACATCATCCACAAAGCCAACTTGGAAGGAATGGCCATTGTTCAGAATGTCTGTGGAGTTGGATGGGTCATATTTCAGTTTGAGGGGCTTCAAGGTAGAATCATAGGAGGTTTGACCAGGAATAATATCAATAGGAGACTGCCTGGGTCCATTAGCAACAGGAAAGCCATCACACCACTTCTCAGGTCCATCAGATGGTCCATATCCCCAGCTGTGAGACATGATTATTGACTTGTGTTCCTATGCAATATAATCCCTTTCAATTCCTACTATTATCTGCCTTATTTGACAATTGTTTGTTGACCGAAAGCCATTGTTTTCAATGGGGCTACATTGTAACCACCC

Function

NR:

description
carbonic anhydrase II

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU834976 False 808 lncRNA 0.36 2 65058158 65130552
TU834978 True 2150 lncRNA 0.42 5 65129970 65142590

Neighbor

gene id symbol gene type direction distance location
cdh12a LOC106569243 coding upstream 63671 64960058 ~ 64994487 (+)
LOC110530343 LOC106569291 coding upstream 359632 64697289 ~ 64698526 (+)
LOC110530342 LOC106569247 coding upstream 390204 64666444 ~ 64667954 (+)
LOC110530338 LOC106569292 coding upstream 404686 64649558 ~ 64653472 (+)
buc LOC106569294 coding upstream 413456 64641121 ~ 64644702 (+)
LOC110529128 LOC106569290 coding downstream 119046 65261636 ~ 65262921 (+)
si:ch211-207d6.2 kiaa1217 coding downstream 158405 65300995 ~ 65386540 (+)
LOC110530354 LOC106569236 coding downstream 273686 65416276 ~ 65421979 (+)
LOC110530357 LOC106569232 coding downstream 368873 65511463 ~ 65520143 (+)
LOC110530359 LOC106569230 coding downstream 419103 65561693 ~ 65587630 (+)
G735243 NA non-coding upstream 95557 64962299 ~ 64962601 (+)
G735242 NA non-coding upstream 95938 64961995 ~ 64962220 (+)
G735230 NA non-coding upstream 111102 64946856 ~ 64947056 (+)
G735164 NA non-coding upstream 166925 64890949 ~ 64891233 (+)
G735431 cssa14h10orf67 non-coding downstream 127485 65270075 ~ 65275313 (+)
G735498 NA non-coding downstream 235179 65377769 ~ 65378118 (+)
G735499 NA non-coding downstream 247011 65389601 ~ 65390041 (+)
G735530 NA non-coding downstream 285622 65428212 ~ 65433525 (+)
G735537 NA non-coding downstream 296508 65439098 ~ 65442283 (+)
G735064 NA other upstream 227255 64830624 ~ 64830903 (+)
G735047 NA other upstream 236113 64821615 ~ 64822045 (+)
G734690 LOC106569249 other upstream 438151 64619040 ~ 64620007 (+)
LOC110530334 LOC106569251 other upstream 507018 64546280 ~ 64551340 (+)
G735512 NA other downstream 259633 65402223 ~ 65403099 (+)
LOC110530360 tmm70 other downstream 456795 65599331 ~ 65602141 (+)
LOC110530364 LOC106569228 other downstream 524276 65659289 ~ 65670369 (+)
si:ch211-106n13.3 LOC106569214 other downstream 981618 66100360 ~ 66125932 (+)

Expression


Co-expression Network