G735569 (LOC105024267)


Basic Information

Item Value
gene id G735569
gene name LOC105024267
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65485020 ~ 65485307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU835267
CTGCTTTCACAGAACAATGAATATGGGCTTTGGATTCATAATTGACCCAGTCGAATCCTGCCTCCACCGCGAGCCGGGATAGCATTCCATATTTGCTCTTATCTCTGTCAGAGGTGGTGATATCCACAGCCCTTCCTTCATAGTGTAAAGATTCTTCGAAATGGTGTCCATCCTCGTCCCAGCCTTCTGTCACGCGCAGCTTCACTCCCGGCCATTGATTCATGACTGAAATAGCCAAAGAGTTCAGTTTGTCCTTACATCTCTGAAAAGCATAAATAGATAATTGAG

Function

NR:

description
sonic hedgehog-like protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU835267 True 288 lncRNA 0.45 1 65485020 65485307

Neighbor

gene id symbol gene type direction distance location
LOC110530354 LOC106569236 coding upstream 63041 65416276 ~ 65421979 (+)
si:ch211-207d6.2 kiaa1217 coding upstream 98480 65300995 ~ 65386540 (+)
LOC110529128 LOC106569290 coding upstream 222099 65261636 ~ 65262921 (+)
dlgap1a LOC106569241 coding upstream 231047 65142215 ~ 65253973 (+)
cdh18a LOC106569242 coding upstream 398198 65007887 ~ 65086822 (+)
LOC110530357 LOC106569232 coding downstream 26156 65511463 ~ 65520143 (+)
LOC110530359 LOC106569230 coding downstream 76386 65561693 ~ 65587630 (+)
LOC110530360 tmm70 coding downstream 114024 65599331 ~ 65602141 (+)
pi15b LOC106569289 coding downstream 169132 65654439 ~ 65657897 (+)
LOC110530364 LOC106569228 coding downstream 173982 65659289 ~ 65670369 (+)
G735538 NA non-coding upstream 37390 65447384 ~ 65447630 (+)
G735537 NA non-coding upstream 42737 65439098 ~ 65442283 (+)
G735530 NA non-coding upstream 51495 65428212 ~ 65433525 (+)
G735499 NA non-coding upstream 94979 65389601 ~ 65390041 (+)
G735498 NA non-coding upstream 106902 65377769 ~ 65378118 (+)
G735570 NA non-coding downstream 1474 65486781 ~ 65487147 (+)
G735573 NA non-coding downstream 6545 65491852 ~ 65492149 (+)
G735619 NA non-coding downstream 89798 65575105 ~ 65600245 (+)
G735656 NA non-coding downstream 159519 65644826 ~ 65645051 (+)
G735678 NA non-coding downstream 203399 65688706 ~ 65750913 (+)
G735512 NA other upstream 81921 65402223 ~ 65403099 (+)
G735064 NA other upstream 654117 64830624 ~ 64830903 (+)
G735047 NA other upstream 662975 64821615 ~ 64822045 (+)
LOC110530343 LOC106569291 other upstream 787151 64697289 ~ 64698526 (+)
si:ch211-106n13.3 LOC106569214 other downstream 638901 66100360 ~ 66125932 (+)
G737194 LOC106569203 other downstream 1169355 66654662 ~ 66655753 (+)
kncn kncn other downstream 1214379 66699211 ~ 66704200 (+)

Expression


Co-expression Network