G738344 (LOC106569180)


Basic Information

Item Value
gene id G738344
gene name LOC106569180
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67773448 ~ 67775640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU838407
gcagcACACTTGCTGTTGTTATAGCCATCTCTTCCAAAATAGGTTGTGTGTGAAACGTTGTTGCATTTAAAGTGGAattgacagcattttagcaacatgaaatctaaTTCAAATCTGTTCACATACACCCCCAGGACGAATGACACTTTTTTTATGACAAGCGaccacttagatatggtcatGTTTTCATACATTATTAAAATGTTTGGATATTATGTATACTAAGGCATCACGACACCACTGGCCCTTCGTGTTCTACAAAAAGTGCACTTCCCTACAGGAGTGCGCTGGTATTACGGTTACTGTCCTTTCAGAATTacaaacctgtcacacactgaagccCTATAGGTTCGCCACTGCGCAAACATGTCTGTAATAGATACAGTATAAAGGCTGTTAAGATAATGTTTCAATAAAGgagtgtatatatttggcctggTGAAGCGGTTTAATGGGCTGAATGAATGGAGTTTTTTACTCCGCTGGTCTCGGGAAGAAATTATGAGTCCTCACTgtccgagaccgagtcaagaccgagtacAAATGTATCCAATACCGGTGAattacagctgtgagtctttcggggtaaatctctaagagctttgcacacctggattgtacaatattcgcacattattctttaaaaataaattcaagttctgtcaagttggttgttgaacaTTGCTAGACAAGCATTTTTCAGTCTTGCAACAGATTTAAGCCAACTTAATTCGaaattgtaactaggccactcaggaacattcaatgttatcTTGGTAAGTGACTCcagtgtacactgagtatacagaacattaagaacacctgctctttccatgacatagactgaccaggtgaatccaggtgaaagataaaACTCAATAGGAAGGTTTTCCTAATGTTTGATATACTCagtatatatttggccttgtcTTTTAGGTTatagtcctgctgaaaggtgaatttatcttccagtggcattggaaaacctccctggtctttctggttgaatctgggtttgaaattcactgctcgactgagggaccttaaaaaTAATTGTGGGgatgaagtagtcattcaaaaatcatgttaaacactattattgcacacaaagtgagtccatgcaacttatgtgacttgttaagcaattctttactcctgaacttatttaggcttgcaataacAATGGGGTTGAATATTttttgactgaagacatttcagcttttcatttttaattaatttgtaaaaaattctaaaaacgtAATTCCaatgacattatgggatattgtgtgtaggccagtgacaccaaatatttattgaatgcattttaaattcaggctgtaacaacaaaatgtggaaaaagtcaaggggtgtgtgaatacattctgaaggcaccgtaCTTTTCAGGAGTCAACTACATTGAGGTTGTGCAGATGCATGATCAGTGTTTCAATCAATGCATTTGCTGCCATTCTAAAGCTGTCCTGAGGGAGGCAGTGTAGTGCAGCATTCAAACAgtgaaccacaacaacaaccaaaaGACACAGCAGACAAGCAGAGCCAAACCTGGGGCCAAGAGCTGGGTTCCTTCACAATGACAACACGGGGGAGagcaaaacacacagcacattaTGACACAAGTGTGGGATAATTAGCAAAGCAGGCCTTGCATAGTGTTAACATACATCCAATGAGACTTTTGCACAGCAGAAGCAAAGGTTCCAGGAGGTGAAGAGGACCCAATCACTCACCTTGTTTTCCATTCCTCGGTTGATTTGGAGCGATTTTTCCGGGACAGTCTTTgtttctcctctaccctcttcttCTCTGCACTTGCCGAGTCTATGTCTCCTTTTTCCATGTGTCTGATGTCAGGCCTGAGTCGACAGTCTGTGGGGGGTAGGACACCCTTCATGTCTTCCTCCAGCTCATTCAGCTGCATGGCAAATGTGGAGAAAGCATAGaactacgagagagagagagagtggattcAACAAATCAATAACTGAGTCAAACTGACAACCAGTTGAATCAGCCAAGAAGGGTAAAATATCATCAGTACATCCCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU838407 True 2066 lncRNA 0.41 3 67773448 67775640

Neighbor

gene id symbol gene type direction distance location
LOC110530969 LOC106569181 coding upstream 3962 67759384 ~ 67769486 (+)
LOC110530410 LOC106569184 coding upstream 46506 67693817 ~ 67726942 (+)
LOC110530407 LOC106569186 coding upstream 79806 67577845 ~ 67693642 (+)
LOC110530403 LOC106569190 coding upstream 299146 67430853 ~ 67474302 (+)
LOC110530401 LOC106599252 coding upstream 343377 67290677 ~ 67430071 (+)
LOC110530413 NA coding downstream 128876 67904516 ~ 67924427 (+)
LOC110530418 LOC106569175 coding downstream 410267 68185907 ~ 68198975 (+)
LOC118965633 NA coding downstream 699763 68475403 ~ 68506363 (+)
LOC110530424 LOC106569169 coding downstream 1097797 68873437 ~ 68898424 (+)
LOC110529135 NA coding downstream 1229606 69005246 ~ 69006608 (+)
G738262 NA non-coding upstream 196342 67576771 ~ 67577106 (+)
G738260 NA non-coding upstream 197361 67575871 ~ 67576087 (+)
G738149 NA non-coding upstream 376336 67396880 ~ 67397112 (+)
G738126 NA non-coding upstream 431436 67341197 ~ 67342012 (+)
G738367 NA non-coding downstream 26682 67802322 ~ 67804768 (+)
G738793 LOC100380853 non-coding downstream 97635 67873275 ~ 67873508 (+)
G738798 NA non-coding downstream 107223 67882863 ~ 67883114 (+)
G738832 NA non-coding downstream 148967 67924607 ~ 67983064 (+)
G738835 NA non-coding downstream 151870 67927510 ~ 67928146 (+)
G738244 NA other upstream 225839 67546129 ~ 67547609 (+)
G738020 NA other upstream 541535 67231182 ~ 67231913 (+)
G737783 NA other upstream 557819 67170467 ~ 67215629 (+)
G737234 gs02 other upstream 971368 66798573 ~ 66802080 (+)
kncn kncn other upstream 1069363 66699211 ~ 66704200 (+)
G739648 NA other downstream 1082743 68858383 ~ 68858753 (+)
G739670 NA other downstream 1127725 68903365 ~ 68906965 (+)
G739708 NA other downstream 1228697 69004337 ~ 69005116 (+)
G740827 ripk1 other downstream 1760760 69536400 ~ 69538276 (+)

Expression


Co-expression Network