XLOC_002638


Basic Information

Item Value
gene id XLOC_002638
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11895373 ~ 11898575 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006011
tgagcgtatttgggcaggaatgtctttgaagctttcctgcttatctctccagttcccctgaacaacttaagctgtcacgaaaatccagacttcttggagccaggagtcgtaaaaccttCTGACCAAAgccagaccgtgataaaatcaataagaaattttatctgtggactgtacgctacaagTGATAACTGACGCGAACGGCGAGAAATACTCCTGGATCAGTCGGAAATGCAGCTCAATGAGCTGTACACGACTTTGGGAGACAGAGATGATGACCCGGAGCTGAAGGCTTTCTCTCCACTGGCCTCTCGCTCAACTGTGCTTCACTTTGGCTTACAGAGTAACCTCAActaagAATATATGCATCAGCCCTCACTGCGTCTCTCACGGTGGACTACTGGAGGTCATCACAGGCTCGACGAGAATGCAGAAGTGGCCACTACATTTGCACACCTTTCTAGATTCTTCCAGCGGGTTTACAAGGATGAGGCTGTCCGCATCTTTTTACACAGCATTTACAATTTAACACACATTAAAGACATGATGGTGTGGTACCCACATAAATGTTGGCCAACTTGCTGAAAAATAATTCAAACATGAATGTTTATGGGCCATGGCTGAGCTGTCAACCCGCAGGCCAAGGGGGGGGGGGTGGCTTTGGCGACCAGTGCTTGCCCGGGATAAGTGAGGATGTATTGGGCAGAGAGCACGTGACATGAAGCCATGGAGgccaatggttcaccagcggcaccaTTTACGCATCAGCTGAACCTAAGTGCGCTCACCGGGGGCGTTGGTTAAACCCAGGGgagagcccaccaagccatgcccggataGAGACCACTCTCCGCGGCGtgacccgcgcctggaggggGGTAGCATGTccctgggtttcgctgacctgccgtcaAGTTTTCGATAACAGACAGAAATGGAGCACTTGGTgcaatttttgatttagtggttgaACGAACCAGGGGTCTAAAGAGGAGCCCGTTGCCCCAAGACAAGCGTTCGAACCCGGGCAAagccaagtgcgcgctgctgccccgGTCTTACCAAAGACCCAGGCCTTAGAGGCCAGCAATGCTGCTCCAAGACAAGCGTTCAAACACGGGCAAagccaagtgcgcgctgctgccccgGTCTTACCAAAGACCCAGCCCTCAGatgccagcaaagctgccccaagaCAAGCGTTCAAACACGTGCGAGGCCAGTGGGCTGAACCCCATGGGAGTCAGGGGCCCATGGCTGAGCTATCAACCCGCGCCAAAGCGTCCTTCTGCCCGCAGGCCAGCGCGCGCGCGCCCTGGGGAGACAGGGGGACGCAGCTGAGCAGCCAACCCGCGCCCCCAGCGTTCGTCCCCCCGCAGCAAACATGAGATTTCATTGCTCACGGAGGCTAGAACTACATGCCGCTGGTGCCCCATCCACGAGCCAAAGGCCGGTGGTGCTCCATTCAAAATCTCAAGACCGATTGGGCCACCAGAGGTACGTCTTGGCCAGTTGGGTCACCAGCAGCACGTCTGTCTTGTCCGTGCGGTTTGGAGGAGTTAGTGTCCCCGGGCTTAATAGTGGGGTGCCCGGGCACTGCTGGTGATCAGGTGCCAATCTGGAGGGTCCTTTGGAATCAGCGCTTGCCCCCGAAGAGTGGGGGTACCCCGGGCAGTGCGCGCACGGCAGTTCTTGGTTCATCCACCCACGTCTGTCTGCCCCCTTTCCCCCCGAATCCCATTCGCGGGGGAGAGGGGCAGACAAACGTGACTGGGTAAACCAAGAACTGCTGGTGCCCCTGGAGAAGAAACTAACATTTCCTCTCCGGGCCACCAGCAGCTCTTGGTTGAGCTGCTGGCGCCCCTGAGAACAAGTCACCAGCAGCCAAGAGCTGTTGGTGACCCAGAGAGGAAATAAAACCGTCGGTGGTCTAATTTGTCTAATGTCCTTCATCAGATAGCCTCGAGTCCAACCCAAGCACTAGGCAACAGTGACGCTTTTATGGCTTTCTGACTGGTTACCTAACCTCTATCTCTGGGCACCGC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006413 translational initiation biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006011 True 2042 lncRNA 0.55 3 11895373 11898575

Neighbor

gene id symbol gene type direction distance location
XLOC_002637 trim23 coding downstream 55020 11790881 ~ 11840353 (-)
XLOC_002636 adamts6 coding downstream 130934 11593998 ~ 11764439 (-)
XLOC_002635 srek1ip1 coding downstream 497783 11394528 ~ 11397590 (-)
XLOC_002634 plac8.1 coding downstream 510218 11382365 ~ 11385155 (-)
XLOC_002633 plac8.2 coding downstream 518882 11371961 ~ 11376491 (-)
XLOC_002639 CT990561.2 coding upstream 749855 12648430 ~ 12652512 (-)
XLOC_002640 musk coding upstream 1181517 13080092 ~ 13179077 (-)
XLOC_002641 si:busm1-57f23.1 coding upstream 1337525 13236100 ~ 13239367 (-)
XLOC_002642 NA coding upstream 1400264 13298839 ~ 13301973 (-)
XLOC_002643 CR759894.1 coding upstream 1406490 13305065 ~ 13305183 (-)
XLOC_002626 NA non-coding downstream 1107724 10784334 ~ 10787649 (-)
XLOC_002625 NA non-coding downstream 1181146 10712178 ~ 10714227 (-)
XLOC_002623 BX323065.1 non-coding downstream 1562946 10319308 ~ 10332427 (-)
XLOC_002621 NA non-coding downstream 1606690 10261345 ~ 10288683 (-)
XLOC_002646 BX293994.2 non-coding upstream 1708452 13607027 ~ 13607143 (-)
XLOC_002647 BX293994.1 non-coding upstream 1713558 13612133 ~ 13612248 (-)
XLOC_002648 BX000705.1 non-coding upstream 2032994 13931569 ~ 13931696 (-)
XLOC_002622 NA non-coding downstream 1616840 10273729 ~ 10278533 (-)

Expression


Co-expression Network