G739638 (LOC106569170)


Basic Information

Item Value
gene id G739638
gene name LOC106569170
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68845040 ~ 68856024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU839844
GTAGCCGTGTTTGATAGACCATTCAGAGCGCCATTCATGTCTCTGATGTCCACTGTCACAAAATGTTTGTCGTTCACCTCTCTGTCAAGAGTGTCTGTTTTGGTGCTGATGACTCCTGTCTCTGGGTTGATGTAGAACAGGTTGGTCCCAGAGAGGAGGGAGTACCTGATCTTAGTGTGGTCTGTACCAGGCTCGTCTTTGTCTATGGCATTCACCTTCCCCACAACGGTACCTGTTTTGCTTTGTTCCAGCACAGTAAACTGCAGTTGTCCAGTGAAAGTTGGTGCATTGTCATTTACATCTTCTACATTCACTGTGATGGGTAATGGTAAGTCTGTCTCCTGGTTGGTGTATCTGTCAAACACTCTGGCTTGAAATATAAACTGAGGGGTAACCTCGCGGTCAACAGCTCTGTGGACCTTCAGCATCCCAGTTTCCTTTACCACACTAAACACACCCACAGGGTCCTCTGTCACACCAGGCCCACTGAGGGTGTAGTACACGTTGTATGCGGCAGAAGAATCAGATGCAACCAGATCAACTTCCTTTGGAAATGGAGGGGCGTCGTTTTCTATGATGTTGAAGGGCAGAGGGCTCCAACGTCTTTTGGAGCGCTTTAGTAGACCATCTTTCAATACCTGAAACATGCAAAAAGTCACGACACTACAAACATAATACAGTACTTATTTAAAAAGTATAGGACTAGCATCTTCAACATCTTTTACTCTGAGCCAATGTGGAATCCACCTTACTTTTCTAGAGTTCTGGACAAGGTAAACATCCATGTTTTTCTTCTGACCATTGGGGTCCTGAAACTGCACTGAGAATGTCCTGCCATTGGCTGGTACCATAGTGATGTGGACTGTTACTATAGTTCCATCTGCCTGTACTGTGAAGTCCGGGTCACAAGAGGTCAAATGCAAGGTCTTGGTGTCACAGTTGTCGACATCAACTTTTGAAATAACATGCCCAACTGGTACTGTCTGAGGTACTGCTGCTTGTATGGAGTCGGGGATAAAGCAGGAGTCCACACATGAGATGATCAAAAAGATGCATAAATTGACATTTAAGTTCCGTGCCATTTTTGTTACTACCATTCGAAACATCAAGACTATAGTGACGAAACCACACGCAGGAACAAGAAGTATAAGTGTTTCTGTCAAGGGCGAGGATTAGTGGGTGGAATATCCTTACACCAATCAACAGTAACCTAATTGTGTCCGTATGAGTCTTCCATTGCAGGTATCGGAATGACGGTTTCGTTTATGAAAAAGTACCCCGCCCGCGATTACTCAATTGGCTACCTCGACGACGGGACGCATTCCTCGTCTAGTACTCCACC
>TU839847
GTAGCCGTGTTTGATAGACCATTCAGAGCGCCATTCATGTCTCTGATGTCCACTGTCACAAAATGTTTGTCGTTCACCTCTCTGTCAAGAGTGTCTGTTTTGGTGCTGATGACTCCTGTCTCTGGGTTGATGTAGAACAGGTTGGTCCCAGAGAGGAGGGAGTACCTGATCTTAGTGTGGTCTGTACCAGGCTCGTCTTTGTCTATGGCATTCACCTTCCCCACAACGGTACCTGTTTTGCTTTGTTCCAGCACAGTAAACTGCAGTTGTCCAGTGAAAGTTGGTGCATTGTCATTTACATCTTCTACATTCACTGTGATGGGTAATGGTAAGTCTGTCTCCTGGTTGGTGTATCTGTCAAACACTCTGGCTTGAAATATAAACTGAGGGGTAACCTCGCGGTCAACAGCTCTGTGGACCTTCAGCATCCCAGTTTCCTTTACCACACTAAACACACCCACAGGGTCCTCTGTCACACCAGGCCCACTGAGGGTGTAGTACACGTTGTATGCGGCAGAAGAATCAGATGCAACCTAGACCAGAAAACAATCAAATATTATCTGTGGTCAAGCTTCAACAAGCAGTGGGATAATCATTCGGGTTAGAAAATTGTACAGTAATgatatgtttttggttggatatgtttctcaatttctttcctTGGATTTTGCAATCTTTATCACACCATTTGCCATTATTGTTAGTCGTATGGTTTGGCCTc
>TU839846
CAGAATGTGCCTTAGCCACAagtgagaaagagtgagaaaTAAAGTGGATCATGGGTAAGGAGAATTGAAAGCACAGGTAGAGGATAATTTGGCTGTTGCCCATGTAGGAGTGTGTTATGACTACATTACATGAAATATGGACAAAGCTTCGGTTTATTGTCCATATTCAAATAGACAGAATGTGCTGAAAGTAATGGAAGTTGTAACTTATTTTAAGGACATTACCAGATCAACTTCCTTTGGAAATGGAGGGGCGTCGTTTTCTATGATGTTGAAGGGCAGAGGGCTCCAACGTCTTTTGGAGCGCTTTAGTAGACCATCTTTCAATACTTTTCTAGAGTTCTGGACAAGGTAAACATCCATGTTTTTCTTCTGACCATTGGGGTCCTGAAACTGCACTGAGAATGTCCTGCCATTGGCTGGTACCATAGTGATGTGGACTGTTACTATAGTTCCATCTGCCTGTACTGTGAAGTCCGGGTCACAAGAGGTCAAATGCAAGGTCTTGGTGTCACAGTTGTCGACATCAACTTTTGAAATAACATGCCCAACTGGTACTGTCTGAGGTACTGCTGCTTGTATGGAGTCGGGGATAAAGCAGGAGTCCACACATGAGATGATCAAAAAGATGCATAAATTGACATTTAAGTTCCGTGCCATTTTTGTTACTACCATTCGAAACATCAAGACTATAGTGACGAAACCACACGCAGGAACAAGAAGTATAAGTGTTTCTGTCAAGGGCGAGGATTAGTGGGTGGAATATCCTTACACCAATCAACAGTAACCTAATTGTGTCCGTATGAGTCTTCCATTGCAGGTATCGGAATGACGGTTTCGTTTATGAAAAAGTACCCCGCCCGCGATTACTCAATTGGCTACCTCGACGACGGGACGCATTCCTCGTCTAGTACTCCACC

Function

NR:

description
desmocollin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU839844 False 1342 lncRNA 0.45 8 68845040 68856024
TU839847 False 721 lncRNA 0.45 4 68845040 68846736
TU839846 True 920 lncRNA 0.43 4 68854381 68856024

Neighbor

gene id symbol gene type direction distance location
LOC118965633 NA coding upstream 338677 68475403 ~ 68506363 (+)
LOC110530418 LOC106569175 coding upstream 646065 68185907 ~ 68198975 (+)
LOC110530413 NA coding upstream 920613 67904516 ~ 67924427 (+)
LOC110530969 LOC106569181 coding upstream 1075554 67759384 ~ 67769486 (+)
LOC110530410 LOC106569184 coding upstream 1118098 67693817 ~ 67726942 (+)
LOC110530424 LOC106569169 coding downstream 17413 68873437 ~ 68898424 (+)
LOC110529135 NA coding downstream 149222 69005246 ~ 69006608 (+)
LOC110530427 LOC106569165 coding downstream 163176 69019200 ~ 69045596 (+)
LOC110530428 LOC106569166 coding downstream 190387 69046411 ~ 69116995 (+)
LOC110530431 igfbp-3b1 coding downstream 279547 69135571 ~ 69148676 (+)
G739634 NA non-coding upstream 15455 68829288 ~ 68829585 (+)
G739633 NA non-coding upstream 15997 68828788 ~ 68829043 (+)
G739624 NA non-coding upstream 27341 68817499 ~ 68817699 (+)
G739622 NA non-coding upstream 28694 68816119 ~ 68816346 (+)
G739384 NA non-coding upstream 321394 68443190 ~ 68523646 (+)
G739735 NA non-coding downstream 143148 68999172 ~ 68999388 (+)
G739736 NA non-coding downstream 144147 69000171 ~ 69000626 (+)
G739710 NA non-coding downstream 147493 69003517 ~ 69004130 (+)
G739746 NA non-coding downstream 189578 69045602 ~ 69045872 (+)
G739748 NA non-coding downstream 261539 69117563 ~ 69119121 (+)
G738244 NA other upstream 1297431 67546129 ~ 67547609 (+)
G738020 NA other upstream 1613127 67231182 ~ 67231913 (+)
G737783 NA other upstream 1629411 67170467 ~ 67215629 (+)
G737234 gs02 other upstream 2042960 66798573 ~ 66802080 (+)
G739648 NA other downstream 2359 68858383 ~ 68858753 (+)
G739670 NA other downstream 47341 68903365 ~ 68906965 (+)
G739708 NA other downstream 148313 69004337 ~ 69005116 (+)
G740827 ripk1 other downstream 680376 69536400 ~ 69538276 (+)
G742095 NA other downstream 1770197 70626221 ~ 70626744 (+)

Expression


Co-expression Network