XLOC_026383


Basic Information

Item Value
gene id XLOC_026383
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27408273 ~ 27442493 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053033
CCACTCAAGAAAGGCTGACATAACTGGGATAAGACAAAAAGGCTTTGTTATTTGGTGAAATTGCATGAAGAGGGGCGCAGATGATGTTATTTAGCACATGGATTTGACAAGTTTGCATTCAGAGATTATATTATGCACATGGCTTAGTACTTTCCGGCTGAAAAAACTTGGTTGGTTTAGACTCATCTGCTTCATGCTTGTCTCAGAGCCTGATGCAAATCAGCAATTCCCAACAGCTTTTTCTCCACACATGACATCCTTGAATCACAACGgctgaagaaaaaaactcattcaGAAAGGCGCTCTTTACCGGCCATCATCAACAAATGACCTTTTCATGTGAAGGATTCGTTTTTTTAAGGTTCTCCAGAGAACGTCCTTAAAATAGAGCATCTTATTTGATCATGTGCACATAAATCTACAGGCTCGCCGCTCCATGCTGAAAGAGACGAATGAGGAAGGAGCGTTTTGTAGTGTTCTACTTAGTCACTGATGCACTAACGCCACATGCATTTCACCACAGCCACGGCAGAGGAACATAAGCTGACATCATTTGATGGCACGACTGACAAGTTAATATGTTATTAAACGGATATCTTCTCCCAGCCGTTCTAATCATATTTTCGTTCACACTGTATCCTATTACCAGGATTTATCACAGGTCTTAAGGAGATTGAAATGAGGGAAAACGTGCATATGATTTATTATGTTGACAATACCTGTTCTGATAATGTGCACTGTCTTCTTATCTCTATGTTAAATAACACAATGTGGTCCGCCTGGGACTTTCTATGCAGTGGGTTATTATTTTATCACATAGGTTGCTTTTGAAAAAGAGTTCTGATGTTAAAGCAGATTGGGAAGCTTATTAAAGAAAGGTGTGCAGTTACATTGTCAAGAGTATTTTTATAAGGTGGATGAAAATGGCAATAAAACCCCATAGACTTGAATGCTAAAGACTCATATCTAGGGATCTGAATATCATAAAGACATGTTAGTTTTTCAATAAAAACTCAGAAGAATAGCCTGACAAATCTATGCAGAAATCATTTTGAAGCGagaaaaatattgttattttaatgtggaagggatagtttaaccaaaaataaaatttgactgaAGTGGATTGAAActtttatgggtttctttcttctgttcaatacaaaataagatagtttgaagaaagttAAAAGCCTGTGCCCATTGACTTCCCTAATAAGAAAAagaattactatggaagtcaataggtttcttcagaatatcgtctttgtgttcaacagattaaaTAAACCCAAGCAGTGTTGGAACAAATTAAATTTCGTTTGTGTGAactattaaaaaactattttagaagaaattatttttattcttaccTTAGC
>TCONS_00053034
AAAACATTTGCACTGCACTAGCCTTAAATTTACAGCAACATATGAGCATTATGCAAGGAACCCACTCAAGAAAGGCTGACATAACTGGGATAAGACAAAAAGGCTTTGTTATTTGGTGAAATTGCATGAAGAGGGGCGCAGATGATGTTATTTAGCACATGGATTTGACAAGTTTGCATTCAGAGATTATATTATGCACATGGCTTAGTACTTTCCGGCTGAAAAAACTTGGTTGGTTTAGACTCATCTGCTTCATGCTTGTCTCAGAGCCTGAGATGTCAGGGATGCCACAAGCGAGTTGATCCGTTCCTCATCACGGCGCTGTGCTGATGGATGCAAATCAGCAATTCCCAACAGCTTTTTCTCCACACATGACATCCTTGAATCACAACGgctgaagaaaaaaactcattcaGAAAGGCGCTCTTTACCGGCCATCATCAACAAATGACCTTTTCATGTGAAGGATTCGTTTTTTTAAGGTTCTCCAGAGAACGTCCTTAAAATAGAGCATCTTATTTGATCATGTGCACATAAATCTACAGGCTCGCCGCTCCATGCTGAAAGAGACGAATGAGGAAGGAGCGTTTTGTAGTGTTCTACTTAGTCACTGATGCACTAACGCCACATGCATTTCACCACAGCCACGGCAGAGGAACATAAGCTGACATCATTTGATGGCACGACTGACAAGTTAATATGTTATTAAACGGATATCTTCTCCCAGCCGTTCTAATCATATTTTCGTTCACACTGTATCCTATTACCAGGATTTATCACAGGTCTTAAGGAGATTGAAATGAGGGAAAACGTGCATATGATTTATTATGTTGACAATACCTGTTCTGATAATGTGCACTGTCTTCTTATCTCTATGTTAAATAACACAATGTGGTCCGCCTGGGACTTTCTATGCAGTGGGTTATTATTTTATCACATAGGTTGCTTTTGAAAAAGAGTTCTGATGTTAAAGCAGATTGGGAAGCTTATTAAAGAAAGGTGTGCAGTTACATTGTCAAGAGTATTTTTATAAGGTGGATGAAAATGGCAATAAAACCCCATAGACTTGAATGCTAAAGACTCATATCTAGGGATCTGAATATCATAAAGACATGTTAGTTTTTCAATAAAAACTCAGAAGAATAGCCTGACAAATCTATGCAGAAATCATTTTGAAGCGagaaaaatattgttattttaatgtggaagggatagtttaaccaaaaataaaatttgactgaAGTGGATTGAAActtttatgggtttctttcttctgttcaatacaaaataagatagtttgaagaaagttAAAAGCCTGTGCCCATTGACTTCCCTAATAAGAAAAagaattactatggaagtcaataggtttcttcagaatatcgtctttgtgttcaacagattaaaTAAACCCAAGCAGTGTTGGAACAAATTAAATTTCGTTTGTGTGAactattaaaaaactattttagaagaaattatttttattcttaccTTAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053033 False 1379 lncRNA 0.36 2 27408273 27442432
TCONS_00053034 True 1500 lncRNA 0.37 3 27408273 27442493

Neighbor

gene id symbol gene type direction distance location
XLOC_026382 NA coding downstream 117493 27288743 ~ 27290780 (-)
XLOC_026381 CR954963.2 coding downstream 324859 27083298 ~ 27083414 (-)
XLOC_026380 atf7ip2 coding downstream 336094 27058461 ~ 27072179 (-)
XLOC_026379 CR954963.1 coding downstream 350238 27045647 ~ 27058035 (-)
XLOC_026378 NA coding downstream 406866 27000787 ~ 27001407 (-)
XLOC_026384 NA coding upstream 152544 27595037 ~ 27601812 (-)
XLOC_026385 si:ch211-157c3.4 coding upstream 199893 27642386 ~ 27647845 (-)
XLOC_026386 PDE6G coding upstream 263620 27706113 ~ 27713180 (-)
XLOC_026387 NA coding upstream 334869 27777362 ~ 27783292 (-)
XLOC_026388 dnase1 coding upstream 336482 27778975 ~ 27784457 (-)
XLOC_026372 NA non-coding downstream 727852 26663733 ~ 26680421 (-)
XLOC_026391 NA non-coding upstream 473731 27916224 ~ 27927053 (-)
XLOC_026392 NA non-coding upstream 479294 27921787 ~ 27924016 (-)
XLOC_026394 NA non-coding upstream 1001741 28444234 ~ 28502493 (-)
XLOC_026395 NA non-coding upstream 1016841 28459334 ~ 28462351 (-)

Expression


Co-expression Network