G739821 (LOC106569164)


Basic Information

Item Value
gene id G739821
gene name LOC106569164
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69181513 ~ 69192634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU840044
ACCCAACTTTACACTGTACAAGATACAACGTTGTTTACAGCTGTAGTAGTCATTTATTTACAAAGTTCTGCGTGTCAAAGTGATGCGCTAAAAAGGCATTTTTCAATCACTGTAAGCATTTATAGAAGTAAGGCAAAATACTTGAAACTTGATGTATTTACATTTTTGCAGATCAAGGGAAAGTCTTCATCTCTCTAACTAATGGTCATAGTCTACAGCATGGGAGTTGGAAACACTGTGATTCTACAGCTGCCACAGATGTTGCTAAGTCTGTACGTATTTGCAGAATactgttttctctgtttgtgtgtgtgtgtacatgtgtgttgtAAGTGCAGTACAGTAACTCACCCTCTGCTCGCGCTCAGAGCACTTGTACATGAGTGTAAGGAAGTTGAGGTCAGCTGTGTCCGACTCTGTCTGCCTCGCCTCGATCAGACGACCAATGTAGCGGTTGACCCGTGTGCCCGGGCTGGCCTGGCTCACGTTAGCTGACACCGAAGTCCGGTTCCGCAGTTTATCTGGAGCCGTCCGCAGGGCCCTCCGCTGTGGCACAGCATTGTGGGAAACGGAGTCCTGACTTAACTACGTTCAGAGGGTTTGATACCAGCTGTTCAAAACAATGGAGCTTGGAGGAAAAATACTACGGGGCTTTTACTGTCTATTGTTGAGGATCACTGCGGGGTAGAGAAAGTTTATATCTAACTGCATGTAGGTAGGGTtgtgacgataccagtatcgcaatatcGCAATATTTGATTTTCCATgtcaaaaaataaaacacaaagcTGAAGGTCTTTGGACCTTAAAAACCTACTTTAAGTCAAATATTCTGTGATGTAGGTGTTTTTAAAGAAAAAAGACTCTGGAGGACAACATAATAACGTTTGTTTCAAACATTAGGGCTATTTTACTGAAGAAATGAAATCTACCTcattgttttgtttccttgccacgatacgtTTGAGTATCGCGTTACTGGTATTGTGACAACCCTATTTAGCAGGTATATCACAAACCATTCAACAACAATATTGACCATGGAGTAAGAAGAGATTTGTTCTAATTGTATTCAAAAAGGGCAATGAAACAAAGTCAATCATTGTGGTTGACTTGACTTCACATTTGTCAATAACTGACATCAACTTAATAAATGCTTAACTTCACACAACAAACAAAAATCCATTGTTCCCTCTACAGTTCAGTTaacattcattgttccctctacaGTTCAGTTaacattcattgttccctctacaGTTAACATTCATTGTTCCATCTGCAGTTCAGTTaacattcattgttccctctacagttaacattcattgttccctctacaGTTAACattcattgttccatctacagtTCAGTTaacattcattgttccctctacaTTTAACATGCATTGTTCCCTCTACAGTTCAGTTAACATTCATTgtaggtatttggacataaataatggacattttcggaacaaaacaaacatttattgtggacctggaaTGCCTGTAGTGCTTTCTGAtgtatatcatcaaaggtaagggaatatttatcatgtcattttttgtttatgttgacgccatctttgcggctgtggtgtttttacttttgagcgccgtctcagattattgcatggtgctcggcggtcatcgtcaccttcctactagccgccaccgatccctttttcgtttgtctgtttgttttgtcttattagtttcacctgtgttctGTTGTATGATTTAATGAGCTTCCCTATTTTAAGTACGtgtacccgcccttgttttgtgcaggattgtctttatgttacgtgtgtgcgttTTAGGTAGAGTTGGATATATTTTCAGAACTTGGCACCCTGTGTTTTTGGGTAGTCACTTTGTTGTCCGCGCCCTGTGTTGTTGGGCTTCTCATTTTTGTGTGCCGTATTAAAGAGCACTTTTCACAACTGgaactctctgcgcctgattccttcacccacctagtcccgcgtgacagttgaatgatgtggctatgcaaaatcacttgatgtttttggaacgagtgaatctaacgcgccaatgtaaactcagatttttcgaaataaatatgaactttatcaaacaaaacatgcatgtattgtgtaacatgaagtcctatgagtgtcatctgatgaagataattcaaggttagtgattaattttatctttatttctggtttctgtgaatgctatattttgctggaaaatggctgtgcttattgtggttatGTGGAGAccaaacataatcgtttgtagtgctttcgctgaaaagcttatttgaaatcggacactttggtgggattaacaacaagaatagctttaaaatgatatgaaacacatgtatgttttaggaattgtaattatgagatttctgtggtttgaatttggcgccctctattttcactggtagttgtcatatcgatcccggtatcaGGATTGtagccataacaggttaacaGTCATTGTT

Function

NR:

description
PREDICTED: adenylate cyclase type 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU840044 True 2484 lncRNA 0.39 3 69181513 69192634

Neighbor

gene id symbol gene type direction distance location
LOC110530431 igfbp-3b1 coding upstream 32837 69135571 ~ 69148676 (+)
LOC110530428 LOC106569166 coding upstream 64518 69046411 ~ 69116995 (+)
LOC110530427 LOC106569165 coding upstream 135917 69019200 ~ 69045596 (+)
LOC110529135 NA coding upstream 174905 69005246 ~ 69006608 (+)
LOC110530424 LOC106569169 coding upstream 283089 68873437 ~ 68898424 (+)
LOC110530432 LOC106569162 coding downstream 70888 69263522 ~ 69354693 (+)
LOC110530434 LOC106569160 coding downstream 163216 69355850 ~ 69434566 (+)
opn7a LOC106569157 coding downstream 315021 69507655 ~ 69520370 (+)
dusp22b LOC106569155 coding downstream 370352 69562986 ~ 69576816 (+)
LOC100499175 LOC106569154 coding downstream 386360 69578994 ~ 69591039 (+)
G739802 NA non-coding upstream 34292 69145635 ~ 69147221 (+)
G739748 NA non-coding upstream 62392 69117563 ~ 69119121 (+)
G739746 NA non-coding upstream 135641 69045602 ~ 69045872 (+)
G739710 NA non-coding upstream 177383 69003517 ~ 69004130 (+)
G739736 NA non-coding upstream 180887 69000171 ~ 69000626 (+)
G739932 NA non-coding downstream 182490 69375124 ~ 69375357 (+)
G739933 NA non-coding downstream 182917 69375551 ~ 69375818 (+)
G739934 NA non-coding downstream 183298 69375932 ~ 69376131 (+)
G739940 NA non-coding downstream 199664 69392298 ~ 69392513 (+)
G739942 NA non-coding downstream 213658 69406292 ~ 69406530 (+)
G739708 NA other upstream 176397 69004337 ~ 69005116 (+)
G739670 NA other upstream 274548 68903365 ~ 68906965 (+)
G739648 NA other upstream 322760 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 1258891 67904516 ~ 67924427 (+)
G738244 NA other upstream 1633904 67546129 ~ 67547609 (+)
G740827 ripk1 other downstream 343766 69536400 ~ 69538276 (+)
G742095 NA other downstream 1433587 70626221 ~ 70626744 (+)
G742860 NA other downstream 2502968 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 3350092 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 3442250 72634238 ~ 72714065 (+)

Expression


Co-expression Network