G740790


Basic Information

Item Value
gene id G740790
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69505749 ~ 69505962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU841088
agtatagaatttaTAGACaagactacgtgacccaagctgcagccaaggtctaaaaagtcaacgaacccagaacgcaacaagtttgaagacaaagaaatccttttcttcccaagctacggatgagtagctgtgtctaagtgGGTGAATTCAAGCCGGACCCCCTTAGCATCCAATCCCagcgaatcgtggtatctaaagggtttcattcTTATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU841088 True 214 lncRNA 0.44 1 69505749 69505962

Neighbor

gene id symbol gene type direction distance location
LOC110530434 LOC106569160 coding upstream 71183 69355850 ~ 69434566 (+)
LOC110530432 LOC106569162 coding upstream 151056 69263522 ~ 69354693 (+)
LOC110530431 igfbp-3b1 coding upstream 357073 69135571 ~ 69148676 (+)
LOC110530428 LOC106569166 coding upstream 388754 69046411 ~ 69116995 (+)
LOC110530427 LOC106569165 coding upstream 460153 69019200 ~ 69045596 (+)
opn7a LOC106569157 coding downstream 1693 69507655 ~ 69520370 (+)
dusp22b LOC106569155 coding downstream 57024 69562986 ~ 69576816 (+)
LOC100499175 LOC106569154 coding downstream 73032 69578994 ~ 69591039 (+)
LOC110530440 foxq1 coding downstream 186327 69692289 ~ 69693962 (+)
foxf2a foxf2 coding downstream 193671 69699633 ~ 69703318 (+)
G740789 NA non-coding upstream 206 69505257 ~ 69505543 (+)
G740783 NA non-coding upstream 3419 69502115 ~ 69502330 (+)
G740779 NA non-coding upstream 6557 69498970 ~ 69499192 (+)
G739957 NA non-coding upstream 30308 69443367 ~ 69475441 (+)
G739958 NA non-coding upstream 55458 69444563 ~ 69450291 (+)
G740839 ripk1 non-coding downstream 45490 69551452 ~ 69553671 (+)
G740840 NA non-coding downstream 47823 69553785 ~ 69554031 (+)
G741094 NA non-coding downstream 233161 69739123 ~ 69739334 (+)
G741104 NA non-coding downstream 239128 69745090 ~ 69745594 (+)
G741109 NA non-coding downstream 258121 69764083 ~ 69764429 (+)
G739708 NA other upstream 500633 69004337 ~ 69005116 (+)
G739670 NA other upstream 598784 68903365 ~ 68906965 (+)
G739648 NA other upstream 646996 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 1583127 67904516 ~ 67924427 (+)
G738244 NA other upstream 1958140 67546129 ~ 67547609 (+)
G740827 ripk1 other downstream 30438 69536400 ~ 69538276 (+)
G742095 NA other downstream 1120259 70626221 ~ 70626744 (+)
G742860 NA other downstream 2189640 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 3036764 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 3128922 72634238 ~ 72714065 (+)

Expression


Co-expression Network