XLOC_026388 (dnase1)


Basic Information

Item Value
gene id XLOC_026388
gene name dnase1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27778975 ~ 27784457 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051434
TCTTTCCACAGTAGTGGTAAATAAAAACTCTGCAGAATAAGTGATACTACTTTAATTCCCTGAGAGAGGGACTTGCTGAGAGGCAAATACAAAGGCGCTTTAGTGGTGCAAAAAAGGCTTTCCACCTGTTCTCACGACACACGAGAAAAACAGAACTCAACAGCAGCATGAAGTTTATAATTACTCTAGGTGTGCTCCTGGTCTCTGTCCACATTGGAAGCTCATTTCTGATTGGAGCATTTAACATCAAATCCTTTGGGAACTCAAAAGTGTCTAACGCCACTCTGCTTGACATCATTACCAAGgTGGTGCACCGGTATGACATCATACTCATTCAAGAAGTGCGAGACAGTGACCTCTCCGCAACATCTAAACTGATGGACAGTGTGAATGGAGGCTCCTCGCCGTATCAATATGATTACATTGCCAGTGAGCCATTGGGTAGGAACACATACAAAGAGAGATACCTCTTTGTTTACAGGAGTGAGTCGGTGTCTGCCGTAAACAGTTTCCATTATGATGATGGATGTGAACCGTGTGGAACAGACACATTCAACAGAGAACCATTTGTGGTGATGTTCTCTTCTAAAACAGctgtCCGAGACTTTGCTCTCGTTCCTCAACACACATCCCCAGAAGTGGCTGTGCAGGAAATCGATGCTCTGCATGATGTCGTCTTGGACACTAGACAGCGTCTGAACACAAATaACATCATGCTTTTGGGAGACTTCAATGCTGGCTGCAGGTATGTTTCCAATTCAGCTTGGGCCAATATCCGGCTCCGCACTGACCAGAGTTACACCTGGCTCATCCCAGACAGTGCGGACACCAccgtcacacacacaaactgcccTTATGACAGGATCGTGGCGACTCCTGACATGATGAGAGGAGTGGCTCCAGGATCAGCGCAGGTCTTTGACTTCATGGAGGCTCATGGATTGAGCCAGGACTGGGCACTGGCAGTAAGCGATCACTTTCCAGTTGAGGTCAAGCTCATGTGAAATTCCTTTTCCATTTTCTTGCGGCAGATTTACAGTGAGTGACATGTAATGCTGAGATACacttattgaaaaataaatcctcttttaataattgtaaaagaaacaaattgtacAAATGATTATAATCACTGATGTGCTGCTGAAGAAACATGTACAACCccaagtgatttctaaatttacttgcATTTCATTGAAGATAATGATTTAATGCatgttatttaatgtgtttaaacaaacatgtattccaattttggttcttgcaacacatttaaaaaaagttggaacaataaagcatttaccacttt

Function

symbol description
dnase1 Predicted to enable DNA binding activity and deoxyribonuclease I activity. Predicted to be involved in DNA catabolic process, endonucleolytic. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to several human genes including DNASE1 (deoxyribonuclease 1).

GO:

id name namespace
GO:0006308 DNA catabolic process biological_process
GO:0000737 DNA catabolic process, endonucleolytic biological_process
GO:0005634 nucleus cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0004530 deoxyribonuclease I activity molecular_function
GO:0004536 deoxyribonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-423 Predicted to enable DNA binding activity and deoxyribonuclease I activity. Predicted to be involved in DNA catabolic process, endonucleolytic. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to several human genes including DNASE1 (deoxyribonuclease 1).

Ensembl:

ensembl_id ENSDARG00000012539

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051434 True 1309 mRNA 0.43 9 27778975 27784457

Neighbor

gene id symbol gene type direction distance location
XLOC_026386 PDE6G coding downstream 65795 27706113 ~ 27713180 (-)
XLOC_026385 si:ch211-157c3.4 coding downstream 131130 27642386 ~ 27647845 (-)
XLOC_026384 NA coding downstream 177163 27595037 ~ 27601812 (-)
XLOC_026383 NA coding downstream 336482 27408273 ~ 27442493 (-)
XLOC_026382 NA coding downstream 488195 27288743 ~ 27290780 (-)
XLOC_026389 abat coding upstream 48043 27832500 ~ 27880229 (-)
XLOC_026390 mettl22 coding upstream 100228 27884685 ~ 27915270 (-)
XLOC_026391 NA coding upstream 131767 27916224 ~ 27927053 (-)
XLOC_026392 NA coding upstream 137330 27921787 ~ 27924016 (-)
XLOC_026393 rbfox1 coding upstream 197812 27982269 ~ 28428198 (-)
XLOC_026381 CR954963.2 non-coding downstream 695561 27083298 ~ 27083414 (-)
XLOC_026379 CR954963.1 non-coding downstream 720940 27045647 ~ 27058035 (-)
XLOC_026378 NA non-coding downstream 777568 27000787 ~ 27001407 (-)
XLOC_026394 NA non-coding upstream 659777 28444234 ~ 28502493 (-)
XLOC_026395 NA non-coding upstream 674877 28459334 ~ 28462351 (-)
XLOC_026397 NA non-coding upstream 911305 28695762 ~ 28698856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_01023405_01025613 NA coding CI01000069 null 1023342 ~ 1026058 (-)