XLOC_002639 (CT990561.2)


Basic Information

Item Value
gene id XLOC_002639
gene name CT990561.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 12648430 ~ 12652512 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004905
ATGCTAGAACAGCTCAGTCGAAGAGAGAATGTGATTGTTGGAGGAGATATGAGGGCTGACTCCCCAGGTCACTCGGCCAAGTATGGGATTTATACAATGATGGACCTTGCAACTAACACAGTGGTCGACCTACAGTTAGTCCAGaGTAATGAGGTGGGTGGCAGTTACCATATGGAAAAAGAAGGCCTAAAGAGAAGCCTTGACCTGTTGGATGCCCGCGGTGTTCGTCTGGAATGCATCATCACAGACAGACATCCTCAAATACAGAAATATCTCAGGGATCGAAATGTCACTCAGTTTTACGATGTGTGGCATATCGAGAAAGGAATTTCCAAAAAACTGGACAAGATATGCCAGATAAAGGGGTGTGAGAAGTTGCGTAAATGGTTACGTAGCATCAAAAACCACATCTACTGGACTGCTGCATCATCCACAACAGGTCCTGAAAGAGTGGCAAAGTGGACCTCTATCTTAAACCATGTACAAGACAAACATGTACATGAAGACCCCAATTTTCCGGCTTGTCTGCATCCGCAACGGATAAGCAGAGACAAGAACAAATGGCTGTCGGCTGCAACGATGCCATTCTACAAGCTGGAGAAAGTTCTCGCTAACAAGAGAATATTGAAGGATGTGGCCAAGCTAAGTCCTCACCACCAGACGTCAACTGTTGAAGCTTTCCACAGCGTCATACTGCGGTTTGCACCCAAAAATGTGGTATTCCCATTTCTGGGGATGCTATGCAGgtTGTACTTGGCTGCACTTCATTACAATGAAAATGCCGGGCGTCCCCAGGCCACATCAGCAACTGGTAAACCTATTTACAAGCTTGCCTTTCCAAAGGCAAAGAAAGGAGAGTATAGGGTCCGAGAAGTGAAGACACAGCAAACTTTCgGTTATGTAGAAGAGCTGCTGGACCTCATCTTCAACCAAGTGTTTGTGGACCCATCACCCTATGTTGATGAAGTGTTGGGAATTCACATACCACCTGCTCTATCATCAGCCTACGATCGACCTGAGATGGAGGAGGCTATCTCCAGCAGGGTGACCCGCTTCAATCAATAG
>TCONS_00004906
ATGCCACCGAGAGAACACCCTTGTGCTATTTTAGGATGTAAGGCTCAGCACAAGAGCCTTCACCGTCTTCCTGCAAATGAGCAACAGAGGCTTAAGTGGCTGAGTTTTATCTTTGAAGACAAGGTGCCTGAAAATGTACCAAAACTGTTGTATGTTTGCGCTAACCACTTTAGCGTAGACTGCCTCGAGAACGCGGGACAATATAACTCCGGATTCGCgagtaaattgtttttgaaaactggaTCAGTTCCTACAATACGTGATCCTGTCTCACTTCAAGCCACGATGTCGACAAAGAGCAACAAGGTGGATGTTGCTTGCCAGACAGAAACTTTTCACACATCTTTACACAGTGTTGGTACCCAGTTGTCTTTTAGGACGCTTCAGGCTAAACGCAGGAGTACAAGTGTCCAGACAACAATATCCAGTTTTGAACTGACTGTACCATCAGCGTCCTCTACTGCGTTTATGACTTCGACACCCCTCAAACCTTCACTAAAAAGACCTCGTCTggagctggaggaggaggaggaggaggaggaggaagaagaagcaGCAGCCGAAGAGACTTTGACAGAGTCAAAAATTATAGCCCAAGACTCGGATGTGACATTTGACCCTGCAGAGGAATGCACATCTGCAACTGAACCAACAGACTTGTCaatccAAGAATGCCCAGTTCATAACATTGCCAAGTTCATTGTCTATGAAACATGCCTCATGGAGCTCTTCAGTGACTGCCCAGTGTGTCAGAGGAGATGTGATGTAAAGTCACAAAGGCTTGGGACATTTCTGAGCGTACAGCAAGTCTGCCCACACTGCGAGTTTGTAAGAAAATGGAACAGTCAGCCAATTATTGGTAGTACTCCAGCTGGCAACCTGCATCTTTCTGCTGCTGTCTACTTGAGCGGTGCATCATTTTTTGTAGTTGAAAAGGTATTTGCTGCAATGaaactacacatttttaaatataattcatttcgCCGTCATGCAAGACTTTGCATTGAACCTgctattgtccacaagtggagaAATTGGCAGAGTGAAATGCTAGAACAGCTCAGTCGAAGAGAGAATGTGATTGTTGGAGGAGATATGAGGGCTGACTCCCCAGGTCACTCGGCCAAGTATGGGATTTATACAATGATGGACCTTGCAACTAACACAGTGGTCGACCTACAGTTAGTCCAGaGTAATGAGGTGGGTGGCAGTTACCATATGGAAAAAGAAGGCCTAAAGAGAAGCCTTGACCTGTTGGATGCCCGCGGTGTTCGTCTGGAATGCATCATCACAGACAGACATCCTCAAATACAGAAATATCTCAGGGATCGAAATGTCACTCAGTTTTACGATGTGTGGCATATCGAGAAAGGAATTTCCAAAAAACTGGACAAGATATGCCAGATAAAGGGGTGTGAGAAGTTGCGTAAATGGTTACGTAGCATCAAAAACCACATCTACTGGACTGCTGCATCATCCACAACAGGTCCTGAAAGAGTGGCAAAGTGGACCTCTATCTTAAACCATGTACAAGACAAACATGTACATGAAGACCCCAATTTTCCGGCTTGTCTGCATCCGCAACGGATAAGCAGAGACAAGAACAAATGGCTGTCGGCTGCAACGATGCCATTCTACAAGCTGGAGAAAGTTCTCGCTAACAAGAGAATATTGAAGGATGTGGCCAAGCTAAGTCCTCACCACCAGACGTCAACTGTTGAAGCTTTCCACAGCGTCATACTGCGGTTTGCACCCAAAAATGTGGTATTCCCATTTCTGGGGATGCTATGCAGgtTGTACTTGGCTGCACTTCATTACAATGAAAATGCCGGGCGTCCCCAGGCCACATCAGCAACTGGTAAACCTATTTACAAGCTTGCCTTTCCAAAGGCAAAGAAAGGAGAGTATAGGGTCCGAGAAGTGAAGACACAGCAAACTTTCggtatgtatataaatgtttatagtattattaataattcaataaataaaaaaaataattgcactttacaTTCACAATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004905 False 1065 mRNA 0.47 7 12648430 12650259
TCONS_00004906 True 2019 mRNA 0.44 10 12648660 12652512

Neighbor

gene id symbol gene type direction distance location
XLOC_002638 NA coding downstream 749855 11895373 ~ 11898575 (-)
XLOC_002637 trim23 coding downstream 808077 11790881 ~ 11840353 (-)
XLOC_002636 adamts6 coding downstream 883991 11593998 ~ 11764439 (-)
XLOC_002635 srek1ip1 coding downstream 1250840 11394528 ~ 11397590 (-)
XLOC_002634 plac8.1 coding downstream 1263275 11382365 ~ 11385155 (-)
XLOC_002640 musk coding upstream 427580 13080092 ~ 13179077 (-)
XLOC_002641 si:busm1-57f23.1 coding upstream 583588 13236100 ~ 13239367 (-)
XLOC_002642 NA coding upstream 646327 13298839 ~ 13301973 (-)
XLOC_002643 CR759894.1 coding upstream 652553 13305065 ~ 13305183 (-)
XLOC_002644 il11ra coding upstream 653098 13305610 ~ 13396720 (-)
XLOC_002626 NA non-coding downstream 1860781 10784334 ~ 10787649 (-)
XLOC_002625 NA non-coding downstream 1934203 10712178 ~ 10714227 (-)
XLOC_002623 BX323065.1 non-coding downstream 2316003 10319308 ~ 10332427 (-)
XLOC_002621 NA non-coding downstream 2359747 10261345 ~ 10288683 (-)
XLOC_002646 BX293994.2 non-coding upstream 954515 13607027 ~ 13607143 (-)
XLOC_002647 BX293994.1 non-coding upstream 959621 13612133 ~ 13612248 (-)
XLOC_002648 BX000705.1 non-coding upstream 1279057 13931569 ~ 13931696 (-)

Expression


Co-expression Network