G741654 (ccd16)


Basic Information

Item Value
gene id G741654
gene name ccd16
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70441471 ~ 70463579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU841996
ttctctcaaccagcttcatgaggaatgcttttccaacatatgctgggcacttgttggctgcttttccttcactctgcggttcaactcatcccaaaccatattaattgggttgaggccaggtcatctgatgtatcactcttcttcttggtcaaatagcccttacacagcctggaggtgtgctttGCGtgaatgtcctgttgaaaaacaaatgatagtcccactaagcacaaaccagatgggatggcgtattgctgcagaatgctgtggtaggcatgctggttaagtgtgacttattctaaataaatcaaggacagtgtcaccagaaaagcaccatcacacctccatgcttcacggtgggaactacacatgcagagatcatccgataacctgctctgcgtctcacaaagacacggtggttggaaccaaaaatctaatttggatttatcagaccaaaggacagtgCCTTAAATTCCAAAGATTGacttaccttcatgtcttaaagtaatgatggactgttgtttctctttacttatttgagctgttcttgccatactatggaattggtattttaccaaatagggctatcttctgtataccaccgctgccttgtcacaacacaactgattgtctcaaacgcattaaagaAAGAAGTtatacaaattaacttttaacaaggcacagctgttaattgaaatgcattccagctgattacctcatgaagctggttgagagagtgccaagagtgtgcaacgctgacagtcaaggcaaaggatggctactttgaatctcaaatatacaaggagagtgatggagtgctacatcagatgacctggcctccacaatcacccgacctcaacccaatgagttggaccgcagagtgaaggaaaagcagccaacaagtgctcagaatatgtgggaactccttcaagactgttggaaaagcattcctcatgaagatggttgagagtgcaaagctgtcaacaaggaatgggtagctactttgaagaatctcaaatataaaatctattttgactTGGTTAccgcatgattccatgtgttatttcataggttggatgtcttcactattattctacaatgtagaaaatagtaaaaaaaaataaagaaaaacccttgaatgaatagctgtgtccaaacatttgactggtactatagacATAACTGTACAAGACAACACTTAGACATTCAAAATCCTCAACAAAGGTTTGTCATTGACAGAGGAAAGAAGCTGGCTCCTTTGCAACTTTGCAATTTTATTTACAATCTGGAGAAACATTGACCCTATTCGGTTCAAAAGGACCCAGCAATTTTAAGCAAGGGCCCCTTTAGCCCTCCAGTCTCTTGACAGCAAGTGGAGCAgctcttcttcatcctcctcatcGCTTCCCCGGGAGTCTTCCTGGTCTTCGGTCTTCTCCTTCACAACCTTCTTCACCACATCTTGCTTATCTCTCAATACCTCAACCCTCCGGTAACATTCGATTTGCTCATCGATTTCATCAATCTGACGCTCAAAACGTCCCTCCTCGTCATCCTCGGCTACAATGGCCTCTGATTTAGTGTTCACCTGCCGCATTTCCTTTTGGAACTCTTCCCACTCCTTATCCATTTGATCTTTTGGAGCGTCAACATTGCGGACTTTGGCATCTCTCACTGGGTCGTCAAAGAAGCCTTCTGGTAGTGCTTCAGGTGTATTTTCCTTCTTCTCCACACTCTTCTCAGTTTCATCTGGTTTGAGGATAGACCCGGAATGAGAGGCAGCTGGGACAGCTGGAATGGTGCCGTTGTCAAAGAAATCAGCTGGGAGTCCTGGGGCAGGTGTCCCCTTCTGCACACCCGAGCTGGAGGCTGCCCCTAGGTCAGAAGAGTCACCAGCCTCCTCTTCGTCTTCATTATAGACTCCGGCCAGAAGACTCAGTCCAGTAGATGTTTTTTTCAAAATTCCAGTTAGTTTCTTCGGCCCAGGCGGAGCAGGTTTCGCAAAGAAAACATCAGGCAACCCTGACGACGTAGATGCCTGCTCGTTACCTGCCACAGGTTTAGACTTTTTCCCATTCGTGTCTTCAGAATCCAATGCTTTCCTTTTCAGCGGGGGCTGGGGTCCGTGACCTGTTGAACTTTGTTTAGACCCCTTGAGCTCGGCAACCTTCTCCTTATGCTGTTTTCCAAGAACGTGAGTCTGCCACAATATTTCATTCTTTACCCGCTCGTTGCAGAGTACGCAGCTAAGATGATCGAGACTGTTGTACTTGGCATAAGGGGATTCGACACGCTTCTTATCTATCGTTTGCTTTTGTTTCTCTCTCATCAACCGACGCAGTTCATCTTGATGAATCACTTTCTTCTGCTTATTCTTTGGAGGCATTATTTATTTGCGTTCCAAAACAAAATTTCTGAAAGCTTGGCAAACAACAAAAAT

Function

NR:

description
zinc finger protein 830-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU841996 True 2437 lncRNA 0.44 2 70441471 70463579

Neighbor

gene id symbol gene type direction distance location
LOC110530450 LOC106569144 coding upstream 254999 70172431 ~ 70186472 (+)
dhx30 dhx30 coding upstream 292541 70135455 ~ 70148930 (+)
wrnip1 wrnip1 coding upstream 314021 70103165 ~ 70127450 (+)
LOC110530442 foxc1 coding upstream 713997 69725327 ~ 69727474 (+)
foxf2a foxf2 coding upstream 738153 69699633 ~ 69703318 (+)
LOC110530455 LOC106569138 coding downstream 269 70463848 ~ 70493098 (+)
rpe65a LOC106569137 coding downstream 52909 70516488 ~ 70525948 (+)
LOC110530463 dtna coding downstream 241495 70705074 ~ 70743483 (+)
LOC110530464 mapre2 coding downstream 294425 70758004 ~ 70771560 (+)
LOC110530465 LOC106569128 coding downstream 367132 70830711 ~ 70841350 (+)
G741665 NA non-coding upstream 6097 70435165 ~ 70435374 (+)
G741547 NA non-coding upstream 165761 70271748 ~ 70275710 (+)
G741499 NA non-coding upstream 267690 70173285 ~ 70173781 (+)
G741494 NA non-coding upstream 273337 70167463 ~ 70168134 (+)
G741455 NA non-coding upstream 334406 70106153 ~ 70107065 (+)
G741653 NA non-coding downstream 44271 70507850 ~ 70515932 (+)
G741704 NA non-coding downstream 65079 70528658 ~ 70532557 (+)
G741748 LOC106569134 non-coding downstream 140897 70604476 ~ 70606732 (+)
G742087 NA non-coding downstream 155535 70619114 ~ 70619350 (+)
G742094 NA non-coding downstream 161568 70625147 ~ 70625422 (+)
G740827 ripk1 other upstream 903195 69536400 ~ 69538276 (+)
G739708 NA other upstream 1436355 69004337 ~ 69005116 (+)
G739670 NA other upstream 1534506 68903365 ~ 68906965 (+)
G739648 NA other upstream 1582718 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 2518849 67904516 ~ 67924427 (+)
G742095 NA other downstream 162642 70626221 ~ 70626744 (+)
G742860 NA other downstream 1232023 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2079147 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2171305 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2396829 72779485 ~ 72872336 (+)

Expression


Co-expression Network