G741653


Basic Information

Item Value
gene id G741653
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70507850 ~ 70515932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU841995
GATAGGACATGGGGTTTGGTGTTGGGAGAAGTCCTACCTGTGGATTGGACATGGGGTTAGGTGTTGGAAGGAGACCTCCTCCGGACATAATCCCTGCAACAGCATTTGCTGGCGCCAGCAGTGACAAAGCCTTAGCCTCCTCTGGGATAACACCTACAGAAAAACAAAACAGGCATTATGGGAAGAAGAGAACGTCTACATCTAGAATCTACTAAAGAGGAGAGacattttgaaaaacaaaaaGATTACTTGCTCAGGTATTCTTCAAACAAACATGTGTACAGGTTTCAATACTGTTACCTTAGATAGCTGCTACATTTGAGAAGGTTTGTTCCCTTTATTCTTTTAATCATTGTAGATAGTTATTCTTCTAAGGTTGGGAAAAAAGTATATCACAATACACACTACTCCACTGAACTCTGCCAAGATTGTATCACCTGAAAGTGTATTTTAAGTCATGAACCAAACGTTAGCTAGCACAGCGGCTTCTCCAGTGGGGTGTGCTCTCAATTTTCATATAGATTGAACAAGCGACTCACGTTGGTGGCTTCACTACTAAGGAgcacagagaaaaaaaaaaggaaaaaaaatcgAGATACACAAAACAAAAAGAATTTCAGAGAGTTGGAGGTCAACAGTAAATACTGTACAGTCAGTTTCTACTACTTACCAGCAATACGTAGAAAAACAACCTAGCTAGCAATCAAATTCTAGGTAGGCGATATCTACTCTCCCAATAACCTTACTTGTCACTGCATCAAATATGCTTAAAATTAATGCTTTTTGATCAAGTTTAATAATCAACTTGGCAACATTAGATTAGCTTGTTTTTCATGTCTGACTAATAtagggcaaaaaaaaaaactatgatTTCACATCTCAATGTTACCAATGCTACCTAAAAAAAGAAACATACAATATCTTAATCAAGATGCAACGGGaaaaataacatttacattttttttttttttacagaagacgcacaaacatacacacaccgagacagacacacatacgcacacacccacaaaaaaaaacattgaaaaaaaTGGCACATGGGAGAGAGAATTTAGCTGCAGGAGACAAAACGGTTGGGTGGTATTTTCAGCAGGGCCTGGTTTACAGGACTGGCTGAGCCAGGAAAAAGAActgtaaaacacaacaacaaaaaagaaagaCCACTGTTAAAGAGAGAGCACTGAACCAGTTGCCATTGTCATGTGGGTGGATATCTAAGACAATTAACGACAACTAGATAGTCAGCAACCTTAAAGTACAGTATCACTGGTCAACATAGAAAACACACAGCCTAGTTATTTGAATCTGCCAATTTGAGGGACAGCGAGTGTTGAGTGCATCTAATTTTTAGCTAAATTAAAATTGGATACTAGATTGCAACTAGAGTTCACCCAACTCCCCAAACCAGGATGTGCCTTAAAGCTAAAGGTGAAAAAAGTATGAAATGCAGGTGTAGCAATAGCCGTGTCATTGAGATGTATGTGTATTGTTGACTGTTCAGTGACCATTTGGATCCAATGAGAATTAGATTGGATGTTATACAGGTCAGATTATTAAAATACCTATTTTGATACATAGACGTGTGAGTAGTCAAATAACATGTTGTGTTATACATGTGATCTGCCTTATGGTAATATCTAACTACTGCATTCCACTTAAACTAAAAATACATAGAGAATAGAAAATGAGAGAAAGAAGGACacagaaaaaagagaaagagaaggggttGGGGGGCTGCTTGAATGCTTGCTGGCCTTTTGTAATTGTCTACAATCCCCTGTTGGCAGGCAGAGGACCACTTTCAGCCATCAAGGAGGGGGCTCTGCTTTTGCCTTCTCCACTAcaacaaatcacacacacaaataacagAGATAAGTTTAATAGAGGATAGTCCAATATGGGGGAGAAAATAAAAAGCATGGTTAAGTTTTCATATACATGTAAGTTCCTCTCTGCTTTCTTTTTGTCTGCCCGTGCAGTCTGGGCTTGTTCAGCTCTCTCTGTCGAAGCAAGTGCCTGTCCCTAAAGCAGATCTTGGTATACTGTGATTACTGGTAAAGGGGTTgcggggggtgggggtggagaaTAGGCTCTGGAGACCACTAAAGACTTAAAGTCATCTGTGTTGTTTAGTGTCTATAAGTCCAATACATCATGGGTGGCATTATGACCTTACAGTGTGGCAGTAGCTTTATATAATAAATTATGTGTATGGTGGTTATATGTTTGGTATTTAGTTCCACAGTATACCATGGATATGGGTTGAGAGATCTGATATAGAAATCTCTCATTGTAATTAGCAAGGGGATTGTACAagacacacatggaatcatttatCACAGAATCAGATAGGCTTGTCAGATCGAGAATGGATACTAGGATCTGAAATAGCTAGGACACATGCTTAAATAGTATCTCAAACCACAGGATCATAGAACTCCATCATGAAATTAATGGGCGCGTCACTCTCCCATAACTACGTCATACAGTCAAGGATCATTCATACTGAAGAGGGGAGAACAAAGCACCAACCTTCGGCAAAAGGGACAACGATCAGCGCTCTGTCCACGAAGACTGTGTTGGTCAGATGCTGAGAAACTCCCACGGACTCCGACTCTTGGAACTTCACAAAACACACACGCGACGTCACTGGCAGAGGCGATTCACTGCAATACGGTAGTTTgacctgagccctaggaccatgcctcaggactacctgacatgatgactccttgctgtccccagtccacctggccttgctgctgctccagtttcaactgttctgcctgtgattattattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaa

Function

NR:

description
serine/arginine-rich splicing factor 11-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU841995 True 2898 lncRNA 0.40 2 70507850 70515932

Neighbor

gene id symbol gene type direction distance location
LOC110530455 LOC106569138 coding upstream 14752 70463848 ~ 70493098 (+)
LOC110530454 LOC106569140 coding upstream 47316 70451007 ~ 70460534 (+)
LOC110530450 LOC106569144 coding upstream 321378 70172431 ~ 70186472 (+)
dhx30 dhx30 coding upstream 358920 70135455 ~ 70148930 (+)
wrnip1 wrnip1 coding upstream 380400 70103165 ~ 70127450 (+)
rpe65a LOC106569137 coding downstream 556 70516488 ~ 70525948 (+)
LOC110530463 dtna coding downstream 189142 70705074 ~ 70743483 (+)
LOC110530464 mapre2 coding downstream 242072 70758004 ~ 70771560 (+)
LOC110530465 LOC106569128 coding downstream 314779 70830711 ~ 70841350 (+)
LOC110530467 ub2v2 coding downstream 325575 70841507 ~ 70844898 (+)
G741654 ccd16 non-coding upstream 44271 70441471 ~ 70463579 (+)
G741665 NA non-coding upstream 72476 70435165 ~ 70435374 (+)
G741547 NA non-coding upstream 232140 70271748 ~ 70275710 (+)
G741499 NA non-coding upstream 334069 70173285 ~ 70173781 (+)
G741494 NA non-coding upstream 339716 70167463 ~ 70168134 (+)
G741704 NA non-coding downstream 12726 70528658 ~ 70532557 (+)
G741748 LOC106569134 non-coding downstream 88544 70604476 ~ 70606732 (+)
G742087 NA non-coding downstream 103182 70619114 ~ 70619350 (+)
G742094 NA non-coding downstream 109215 70625147 ~ 70625422 (+)
G742108 NA non-coding downstream 123330 70639262 ~ 70640529 (+)
G740827 ripk1 other upstream 969574 69536400 ~ 69538276 (+)
G739708 NA other upstream 1502734 69004337 ~ 69005116 (+)
G739670 NA other upstream 1600885 68903365 ~ 68906965 (+)
G739648 NA other upstream 1649097 68858383 ~ 68858753 (+)
LOC110530413 NA other upstream 2585228 67904516 ~ 67924427 (+)
G742095 NA other downstream 110289 70626221 ~ 70626744 (+)
G742860 NA other downstream 1179670 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 2026794 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 2118952 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2344476 72779485 ~ 72872336 (+)

Expression


Co-expression Network