XLOC_026392


Basic Information

Item Value
gene id XLOC_026392
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27921787 ~ 27924016 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052463
gagtgagagaataaccccctgctacagaaaatataacacaagattcctaaatttctgcagggagctgatcacagagatgcaggaaagacaggaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgtaagtatatttttgactGACTGCCAGACACTTGTCAAACAGTGATGAGCAAACGAATGGCCGTTCTTTAAAAAAGATCAGGGAGATGCAAGTCTggagattaatatacattttaattcaaaattgatttatctgGAAATATTTCATAATTTGTTGAGATATGTGCCCTTTATGCATTTAGATGTCcatccatgtttaaaatacttttaaatttaacaacggctgcaagttataaaaacaaacaaacacaaaaatgttaaagtaaattgagaaaacattttcatcagtttgacaacatacACAATCTCACAAATAGCATAGAAAAAGTGTATTGATttacctgttaaaaaaaaattaagcaaaaaattaattaaaacgtagatcagctcctgacagacatgttaacaaatcagtttaactcttattaaattcattcattcattcattcattcattttcttttctgcgtagtcccttttttaatctggggtaaccacagcggaatgaactgtcaacttatccagcatatgttttacgcagtggatgcccttccagctgcaagccatcactgggaaacaaccatatacgcttattctcacttatacactacagacaatttagtctacccaattcacctgtacaccatgtctttggacttgtaggcaaaaccggagcacccagagaaaacccacgcaaacgcagggagaatttgcaaactccacacagaaatgccagctgatccaGCCGAGCCTCGAGTCAGcatccttgcttgttggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtatTACCACAAGCTTCTGGGCAGATATGTGGACAGCTATGAGCCAAACTTGGGACGTTTGGTTTTTAGCAGGTGGAGAGACTGTCTGGgcagcagaaacaagacaactaatcataTTTAG

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052463 True 1093 lncRNA 0.38 5 27921787 27924016

Neighbor

gene id symbol gene type direction distance location
XLOC_026390 mettl22 coding downstream 6517 27884685 ~ 27915270 (-)
XLOC_026389 abat coding downstream 41558 27832500 ~ 27880229 (-)
XLOC_026388 dnase1 coding downstream 137330 27778975 ~ 27784457 (-)
XLOC_026387 NA coding downstream 138495 27777362 ~ 27783292 (-)
XLOC_026386 PDE6G coding downstream 208607 27706113 ~ 27713180 (-)
XLOC_026393 rbfox1 coding upstream 58253 27982269 ~ 28428198 (-)
XLOC_026394 NA coding upstream 520218 28444234 ~ 28502493 (-)
XLOC_026395 NA coding upstream 535318 28459334 ~ 28462351 (-)
XLOC_026396 fbxl16 coding upstream 710451 28634467 ~ 28665291 (-)
XLOC_026397 NA coding upstream 771746 28695762 ~ 28698856 (-)
XLOC_026383 NA non-coding downstream 479294 27408273 ~ 27442493 (-)
XLOC_026382 NA non-coding downstream 631007 27288743 ~ 27290780 (-)
XLOC_026381 CR954963.2 non-coding downstream 838373 27083298 ~ 27083414 (-)
XLOC_026379 CR954963.1 non-coding downstream 863752 27045647 ~ 27058035 (-)
XLOC_026399 NA non-coding upstream 828297 28752313 ~ 28756620 (-)
XLOC_026400 BX510989.1 non-coding upstream 877350 28801366 ~ 28905492 (-)

Expression


Co-expression Network