G742130


Basic Information

Item Value
gene id G742130
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70675587 ~ 70676674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU842514
TTAATAAATATTAATGTGCCACATCATTATTGGGCCTATGAAGCAATGCTTAATGTTTGATGAATGCTTGATGAAATAATAAACATTTGTTTTCTCTTCCAAATAAATACTACGTGTGATTCAGGTGAGATGTGGCAAATTGAAAGCAGCGTTACCTGGGGGTTCTTCCGTTAGAAAGCCAGTTGGCTACTGCACCCCGCTACACAACATCCTTTTGTAATGTGCACACTATTTACCCCTGGAATGCTCCAGGCTAATGTCTCAATAATGTTCACTCCTTTCTCAGGTCCTTCCCACAAAGGACTTAACTAATGATCCATGGACAAAATGAAGCATTTAAATTTATTCATTAATCATTCATCTCCAGCTCATTGAAAATGCTAAACTTCCACAAAATTAAGATTGAATATTGAAAAGTGATTGAGGGAGACAGCTTtctagaagagggagagagaaaatgagagagggataaaaaaaaaatgaaacaacaacaacaacaagtgtgCTTGTCTCCTGAGAGGAAGTGTTTTGCTCGGACATTGGTCCGGGTGGTCGAGGTAGTGTACTAAGTGGTAGTTAAGGTCACGGTGGGTTTTAGTAGTCCTGATTAGATCTCCAAATCTGGAGAAGCTTAGAATTTCTGTCAACACTGCCTGTAATTATTCTCTTTTCCAATTAATGGTGACATAGATTAATTATCTGATGAGGCAAAGCCAATTGCAATCATTCACCCTGCTAAAATTAGATCAGTCCTGGCAGCAGCATGAAAGTCACCTGTTTCATTGTTATGGATCTGctgctggtgagagagagagagagagagcgagagagagagagaggggggggggggatagtgaGTGAGTGAAGCGTGCTGGGGTAAGTAAGTTGTCTGGCACCAGGTGAATGTCCAATTACACTGTTATCTGAACTGTAGGCATCTTCTTCTTGTTCAACCCAATGGCATCCAGACCCACTTGTTTGTTCCCTGCTGCTGTCTCCATCGTCGGAGCATCCTCACTGGTTGTTGAGTCATCTGCCAGAGAGTGCAGAAAGGCAGAAATGCGCCGGATTGCTTCTGACAACTCCTC

Function

NR:

description
coiled-coil domain-containing protein 178

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU842514 True 1088 lncRNA 0.42 1 70675587 70676674

Neighbor

gene id symbol gene type direction distance location
rpe65a LOC106569137 coding upstream 149639 70516488 ~ 70525948 (+)
LOC110530455 LOC106569138 coding upstream 182489 70463848 ~ 70493098 (+)
LOC110530454 LOC106569140 coding upstream 215053 70451007 ~ 70460534 (+)
LOC110530450 LOC106569144 coding upstream 489115 70172431 ~ 70186472 (+)
dhx30 dhx30 coding upstream 526657 70135455 ~ 70148930 (+)
LOC110530463 dtna coding downstream 28400 70705074 ~ 70743483 (+)
LOC110530464 mapre2 coding downstream 81330 70758004 ~ 70771560 (+)
LOC110530465 LOC106569128 coding downstream 154037 70830711 ~ 70841350 (+)
LOC110530467 ub2v2 coding downstream 164833 70841507 ~ 70844898 (+)
LOC110530469 LOC106569124 coding downstream 259730 70936404 ~ 70975314 (+)
G742120 NA non-coding upstream 17135 70658249 ~ 70658452 (+)
G742116 NA non-coding upstream 22996 70652140 ~ 70652591 (+)
G742115 LOC106569133 non-coding upstream 24459 70650336 ~ 70651128 (+)
G742108 NA non-coding upstream 35058 70639262 ~ 70640529 (+)
G742094 NA non-coding upstream 50165 70625147 ~ 70625422 (+)
G742131 NA non-coding downstream 2020 70678694 ~ 70678897 (+)
G742154 NA non-coding downstream 48445 70725119 ~ 70774362 (+)
G742195 NA non-coding downstream 136274 70812948 ~ 70813165 (+)
G742220 NA non-coding downstream 192895 70869569 ~ 70869813 (+)
G742222 NA non-coding downstream 193895 70870569 ~ 70870774 (+)
G742095 NA other upstream 48843 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 1137311 69536400 ~ 69538276 (+)
G739708 NA other upstream 1670471 69004337 ~ 69005116 (+)
G739670 NA other upstream 1768622 68903365 ~ 68906965 (+)
G739648 NA other upstream 1816834 68858383 ~ 68858753 (+)
G742860 NA other downstream 1018928 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 1866052 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 1958210 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2183734 72779485 ~ 72872336 (+)
G744696 NA other downstream 2185582 72862256 ~ 72864703 (+)

Expression


Co-expression Network