G742154


Basic Information

Item Value
gene id G742154
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70725119 ~ 70774362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU842544
gttcaagggggccgaatactttcgcaaggcactgtatatatatatatattcctctgCTGTTCTACattctgtgtgttattgtgaCTGTTGTGAAATGCTGTAGGCAGGTGGCTGTTATTACATACTGCCACATGCAGACAAGCTCAGAACATCACAGAAGTTTCCAAGGACAGTGACAAAGGGTGAAAAAAATAAGTCATCCAAAATTCTAGATGTGACAAAATGTTGTAGTATGGAGTGGACAGATAGTGTTTTTATCTGTCAGCAAGCGTTATGTATGTTGCCAGCTTCGGTCGGTCCCATGATCCTTCCATTATGTACGTTGTTTCAAAGTTAttgtttatttgatttttttattaCATATCAACCATATTAATCATGAGAATGCAATAAGAAAATGCCCTGAAGGGCTCGTAGTATCTCCTAAATAACCTTCCTCCATATGTTGCACTGACATTTGACTCTGGAATGGATAATACTGTATGTCCATATACTCACAATTCACACAATTACAAATTAATTACAAAAACAATAATTAAAGCTTAGAAGACTCGATATTGCCTTTCTACATGAAGTGAGGCAGTATGGTCCATGAGAATCATGAATGAAAAGCAGTAGTGAGTTAGTCACATACTAGTCACAATTTGTCTATCTTCATGAATTCTAAGAATTCTGATAAATTAATCAGTGTACTCAAAAATGCCTATTTTGCACCAGATTTGGTGCATCAGTGACAGAAACAAGTTTGTTTCGGTATGGCTTCATCATAAGGGAAGGGAGCTCATTTTAGTGTAGACTAGTATGACCACAATGACATTTATTTTCAACTTTAGTTTTAACAGCAACTAACCATCTTCGTATTCAGTGGAAGTCAGGTatatttcagatgttttcataTGACTTTTGAACCACATGTCTTAGGGAAAGTTGTGAGTCAGTTCACTGAGTAATTTGACATACTATATTCCAAGTACGTACATTGTATACCTTTTTTAATGTTGCATTTATTCTTATTGAACTTGGCAGTGCACCATAATGCTTTAGTCATATATTGTGTAAATGAAAAGGAATGTAAACATGTGCTGtcaataattatatattttttttctgatgtcCCACTCATTATGCATTCCCCAAAACTTGTTGCATGTTTGCATTTTATTTGTGAATAActtgacct
>TU842546
gttcaagggggccgaatactttcgcaaggcactgtatatatatatattcctctgCTGTTCTACattctgtgtgttattgtgaCTGTTGTGAAATGCTGTAGGCAGGTGGCTGTTATTACATACTGCCACATGCAGACAAGCTCAGAACATCACAGAAGTTTCCAAGGACAGTGACAAAGGGTGAAAAAAATAAGTCATCCAAAATTCTAGATGTGACAAAATGTTGTAGTATGGAGTGGACAGATAGTGTTTTTATCTGTCAGCAAGCGTTATGTATGTTGCCAGCTTCGGTCGGTCCCATGATCCTTCCATTATGTACGTTGTTTCAAAGTTAttgtttatttgatttttttattaCATATCAACCATATTAATCATGAGAATGCAATAAGAAAATGCCCTGAAGGGCTCGTAGTATCTCCTAAATAACCTTCCTCCATATGTTGCACTGACATTTGACTCTGGAATGGATAATACTGTATGTCCATATACTCACAATTCACACAATTACAAATTAATTACAAAAACAATAATTAAAGCTTAGAAGACTCGATATTGCCTTTCTACATGAAGTGAGGCAGTATGGTCCATGAGAATCATGAATGAAAAGCAGTAGTGAGTTAGTCACATACTAGTCACAATTTGTCTATCTTCATGAATTCTAAGAATTCTGATAAATTAATCAGTGTACTCAAAAATGCCTATTTTGCACCAGATTTGGTGCATCAGTGACAGAAACAAGTTTGTTTCGGTATGGCTTCATCATAAGGGAAGGGAGCTCATTTTAGTGTAGACTAGTATGACCACAATGACATTTATTTTCAACTTTAGTTTTAACAGCAACTAACCATCTTCGTATTCAGTGGAAGTCAGGTatatttcagatgttttcataTGACTTTTGAACCACATGTCTTAGGGAAAGTTGTGAGTCAGTTCACTGAGTAATTTGACATACTATATTCCAAGTACGTACATTGTATACCTTTTTTAATGTTGCATTTATTCTTATTGAACTTGGCAGTGCACCATAATGCTTTAGTCATATATTGTGTAAATGAAAAGGAATGTAAACATGTGCTGtcaataattatatattttttttctgatgtcCCACTCATTATGCATTCCCCAAAACTTGTTGCATGTTTGCATTTTATTTGTGAATAActtgacct
>TU842547
gttcaagggggccgaatactttcgcaaggcactgtatatatatatatatattcctctgCTGTTCTACattctgtgtgttattgtgaCTGTTGTGAAATGCTGTAGGCAGGTGGCTGTTATTACATACTGCCACATGCAGACAAGCTCAGAACATCACAGAAGTTTCCAAGGACAGTGACAAAGGGTGAAAAAAATAAGTCATCCAAAATTCTAGATGTGACAAAATGTTGTAGTATGGAGTGGACAGATAGTGTTTTTATCTGTCAGCAAGCGTTATGTATGTTGCCAGCTTCGGTCGGTCCCATGATCCTTCCATTATGTACGTTGTTTCAAAGTTAttgtttatttgatttttttattaCATATCAACCATATTAATCATGAGAATGCAATAAGAAAATGCCCTGAAGGGCTCGTAGTATCTCCTAAATAACCTTCCTCCATATGTTGCACTGACATTTGACTCTGGAATGGATAATACTGTATGTCCATATACTCACAATTCACACAATTACAAATTAATTACAAAAACAATAATTAAAGCTTAGAAGACTCGATATTGCCTTTCTACATGAAGTGAGGCAGTATGGTCCATGAGAATCATGAATGAAAAGCAGTAGTGAGTTAGTCACATACTAGTCACAATTTGTCTATCTTCATGAATTCTAAGAATTCTGATAAATTAATCAGTGTACTCAAAAATGCCTATTTTGCACCAGATTTGGTGCATCAGTGACAGAAACAAGTTTGTTTCGGTATGGCTTCATCATAAGGGAAGGGAGCTCATTTTAGTGTAGACTAGTATGACCACAATGACATTTATTTTCAACTTTAGTTTTAACAGCAACTAACCATCTTCGTATTCAGTGGAAGTCAGGTatatttcagatgttttcataTGACTTTTGAACCACATGTCTTAGGGAAAGTTGTGAGTCAGTTCACTGAGTAATTTGACATACTATATTCCAAGTACGTACATTGTATACCTTTTTTAATGTTGCATTTATTCTTATTGAACTTGGCAGTGCACCATAATGCTTTAGTCATATATTGTGTAAATGAAAAGGAATGTAAACATGTGCTGtcaataattatatattttttttctgatgtcCCACTCATTATGCATTCCCCAAAACTTGTTGCATGTTTGCATTTTATTTGTGAATAActtgacct
>TU842543
agttcaagggggccgaatactttcgcaaggcactgtatatatatatatattcctctgCTGTTCTACattctgtgtgttattgtgaCTGTTGTGAAATGCTGTAGGCAGGTGGCTGTTATTACATACTGCCACATGCAGACAAGCTCAGAACATCACAGAAGTTTCCAAGGACAGTGACAAAGGGTGAAAAAAATAAGTCATCCAAAATTCTAGATGTGACAAAATGTTGTAGTATGGAGTGGACAGATAGTGTTTTTATCTGTCAGCAAGCGTTATGTATGTTGCCAGCTTCGGTCGGTCCCATGATCCTTCCATTATGTACGTTGTTTCAAAGTTAttgtttatttgatttttttattaCATATCAACCATATTAATCATGAGAATGCAATAAGAAAATGCCCTGAAGGGCTCGTAGTATCTCCTAAATAACCTTCCTCCATATGTTGCACTGACATTTGACTCTGGAATGGATAATACTGTATGTCCATATACTCACAATTCACACAATTACAAATTAATTACAAAAACAATAATTAAAGCTTAGAAGACTCGATATTGCCTTTCTACATGAAGTGAGGCAGTATGGTCCATGAGAATCATGAATGAAAAGCAGTAGTGAGTTAGTCACATACTAGTCACAATTTGTCTATCTTCATGAATTCTAAGAATTCTGATAAATTAATCAGTGTACTCAAAAATGCCTATTTTGCACCAGATTTGGTGCATCAGTGACAGAAACAAGTTTGTTTCGGTATGGCTTCATCATAAGGGAAGGGAGCTCATTTTAGTGTAGACTAGTATGACCACAATGACATTTATTTTCAACTTTAGTTTTAACAGCAACTAACCATCTTCGTATTCAGTGGAAGTCAGGTatatttcagatgttttcataTGACTTTTGAACCACATGTCTTAGGGAAAGTTGTGAGTCAGTTCACTGAGTAATTTGACATACTATATTCCAAGTACGTACATTGTATACCTTTTTTAATGTTGCATTTATTCTTATTGAACTTGGCAGTGCACCATAATGCTTTAGTCATATATTGTGTAAATGAAAAGGAATGTAAACATGTGCTGtcaataattatatattttttttctgatgtcCCACTCATTATGCATTCCCCAAAACTTGTTGCATGTTTGCATTTTATTTGTGAATAActtgacct
>TU842545
agttcaagggggccgaatactttcgcaaggcactgtatatatatatatatattcctctgCTGTTCTACattctgtgtgttattgtgaCTGTTGTGAAATGCTGTAGGCAGGTGGCTGTTATTACATACTGCCACATGCAGACAAGCTCAGAACATCACAGAAGTTTCCAAGGACAGTGACAAAGGGTGAAAAAAATAAGTCATCCAAAATTCTAGATGTGACAAAATGTTGTAGTATGGAGTGGACAGATAGTGTTTTTATCTGTCAGCAAGCGTTATGTATGTTGCCAGCTTCGGTCGGTCCCATGATCCTTCCATTATGTACGTTGTTTCAAAGTTAttgtttatttgatttttttattaCATATCAACCATATTAATCATGAGAATGCAATAAGAAAATGCCCTGAAGGGCTCGTAGTATCTCCTAAATAACCTTCCTCCATATGTTGCACTGACATTTGACTCTGGAATGGATAATACTGTATGTCCATATACTCACAATTCACACAATTACAAATTAATTACAAAAACAATAATTAAAGCTTAGAAGACTCGATATTGCCTTTCTACATGAAGTGAGGCAGTATGGTCCATGAGAATCATGAATGAAAAGCAGTAGTGAGTTAGTCACATACTAGTCACAATTTGTCTATCTTCATGAATTCTAAGAATTCTGATAAATTAATCAGTGTACTCAAAAATGCCTATTTTGCACCAGATTTGGTGCATCAGTGACAGAAACAAGTTTGTTTCGGTATGGCTTCATCATAAGGGAAGGGAGCTCATTTTAGTGTAGACTAGTATGACCACAATGACATTTATTTTCAACTTTAGTTTTAACAGCAACTAACCATCTTCGTATTCAGTGGAAGTCAGGTatatttcagatgttttcataTGACTTTTGAACCACATGTCTTAGGGAAAGTTGTGAGTCAGTTCACTGAGTAATTTGACATACTATATTCCAAGTACGTACATTGTATACCTTTTTTAATGTTGCATTTATTCTTATTGAACTTGGCAGTGCACCATAATGCTTTAGTCATATATTGTGTAAATGAAAAGGAATGTAAACATGTGCTGtcaataattatatattttttttctgatgtcCCACTCATTATGCATTCCCCAAAACTTGTTGCATGTTTGCATTTTATTTGTGAATAActtgacct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU842544 False 1180 lncRNA 0.35 2 70725119 70774362
TU842546 False 1178 lncRNA 0.35 2 70725119 70774362
TU842547 False 1182 lncRNA 0.35 2 70725119 70774362
TU842543 False 1181 lncRNA 0.35 2 70737216 70774362
TU842545 True 1183 lncRNA 0.35 2 70737216 70774362

Neighbor

gene id symbol gene type direction distance location
rpe65a LOC106569137 coding upstream 199171 70516488 ~ 70525948 (+)
LOC110530455 LOC106569138 coding upstream 232021 70463848 ~ 70493098 (+)
LOC110530454 LOC106569140 coding upstream 264585 70451007 ~ 70460534 (+)
LOC110530450 LOC106569144 coding upstream 538647 70172431 ~ 70186472 (+)
dhx30 dhx30 coding upstream 576189 70135455 ~ 70148930 (+)
LOC110530465 LOC106569128 coding downstream 56349 70830711 ~ 70841350 (+)
LOC110530467 ub2v2 coding downstream 67145 70841507 ~ 70844898 (+)
LOC110530469 LOC106569124 coding downstream 162042 70936404 ~ 70975314 (+)
LOC110530474 LOC106569352 coding downstream 361020 71135382 ~ 71412296 (+)
asic1c LOC106569349 coding downstream 706602 71480964 ~ 71640255 (+)
G742131 NA non-coding upstream 46222 70678694 ~ 70678897 (+)
G742130 NA non-coding upstream 48445 70675587 ~ 70676674 (+)
G742120 NA non-coding upstream 66667 70658249 ~ 70658452 (+)
G742116 NA non-coding upstream 72528 70652140 ~ 70652591 (+)
G742115 LOC106569133 non-coding upstream 73991 70650336 ~ 70651128 (+)
G742195 NA non-coding downstream 38586 70812948 ~ 70813165 (+)
G742220 NA non-coding downstream 95207 70869569 ~ 70869813 (+)
G742222 NA non-coding downstream 96207 70870569 ~ 70870774 (+)
G742224 NA non-coding downstream 98491 70872853 ~ 70873079 (+)
G742228 NA non-coding downstream 102141 70876503 ~ 70876781 (+)
G742095 NA other upstream 98375 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 1186843 69536400 ~ 69538276 (+)
G739708 NA other upstream 1720003 69004337 ~ 69005116 (+)
G739670 NA other upstream 1818154 68903365 ~ 68906965 (+)
G739648 NA other upstream 1866366 68858383 ~ 68858753 (+)
G742860 NA other downstream 921240 71695602 ~ 71715616 (+)
LOC110530976 LOC106569323 other downstream 1768364 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 1860522 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 2086046 72779485 ~ 72872336 (+)
G744696 NA other downstream 2087894 72862256 ~ 72864703 (+)

Expression


Co-expression Network