XLOC_026394


Basic Information

Item Value
gene id XLOC_026394
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28444234 ~ 28502493 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051447
ACCCTTCACTCCACCCCGCGGCTACACCTGGAAAAGACTGATGTGACAGTGACAATGACTGCGCAGCAGAAGCTGATAGGCAATCACCATGCCAAAGATacaaacaaaggtctcaggggattggaacgacatgaagCTCCTTGGGACGCGTCTTGCTCAATGGCCAATCAAGAGCAGTTGTCTGTCATCTTGGCTGGAGAGAAAAGCTGATCCCCCGCTCGTGGAATTGTTCTGTCACTGGATGGATTGATTCATTCTTCAGTGTGCAGGGACCACTAACAACTACTTGTCTTCCTCTGATTATATCTTAGCCAACAGATTATTGAGTTACAGACTCCAGGTACTGACCTTGGCCAAGTATTAATGTCTCTCAGTGCTGCACATCTTTTCTGTAAACCCAGGAATTGGTGTTTGCAGTTATCAACTGGTGACCTAAAAATGGTGGCGAGTGTGTGTTTGATAGTGGATAGCTGAAGTAAATAACACTGTATGCAAATAGTACAATTTTCTCTTAtttactctaaaaatgctggcttgttttaaactatattttgGTGGAATGACGATGGTTAGGTTAAATCTGGGTTACAACAATTTAAAAACCCAAATTTGTGTTAatacaattcagattttttacaCTTGTTAGATGGAATGCATGGTATGTTTGTCAAAATTGACAAAATCTGAAATGCTATGTTTTTGTTTAATAGTCTCTACTCATCTGCACTGTAAAAGAAATCCATAAAGTAACACTTTTTcatatttgtcatttatttatggtATTAAATAGCATTTTGAAACTTTGATATTTCCTCTTTCTGCTACATTTGATGTTAAAACACTTgaaaaagtcacttttattgacaatttttaatagtttgaattgATATATTGCCCTGGGttggcattttttattttactgacaCAATTCTCTACATAATACATACATCTACATCATTTCTTAT

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0005773 vacuole cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0044437 obsolete vacuolar part cellular_component
GO:0017109 glutamate-cysteine ligase complex cellular_component
GO:0015439 ATPase-coupled heme transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051447 True 965 lncRNA 0.37 4 28444234 28502493

Neighbor

gene id symbol gene type direction distance location
XLOC_026393 rbfox1 coding downstream 16036 27982269 ~ 28428198 (-)
XLOC_026391 NA coding downstream 517181 27916224 ~ 27927053 (-)
XLOC_026392 NA coding downstream 520218 27921787 ~ 27924016 (-)
XLOC_026390 mettl22 coding downstream 528964 27884685 ~ 27915270 (-)
XLOC_026389 abat coding downstream 564005 27832500 ~ 27880229 (-)
XLOC_026396 fbxl16 coding upstream 131974 28634467 ~ 28665291 (-)
XLOC_026397 NA coding upstream 193269 28695762 ~ 28698856 (-)
XLOC_026398 gsg1l coding upstream 216324 28718817 ~ 28750495 (-)
XLOC_026399 NA coding upstream 249820 28752313 ~ 28756620 (-)
XLOC_026400 BX510989.1 coding upstream 298873 28801366 ~ 28905492 (-)
XLOC_026387 NA non-coding downstream 660942 27777362 ~ 27783292 (-)
XLOC_026383 NA non-coding downstream 1001741 27408273 ~ 27442493 (-)
XLOC_026382 NA non-coding downstream 1153454 27288743 ~ 27290780 (-)
XLOC_026403 BX510989.3 non-coding upstream 356791 28859284 ~ 28859400 (-)
XLOC_026405 BX510989.2 non-coding upstream 397102 28899595 ~ 28909948 (-)

Expression


Co-expression Network