XLOC_026396 (fbxl16)


Basic Information

Item Value
gene id XLOC_026396
gene name fbxl16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28634467 ~ 28665291 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051448
ACAGAATGAACGGGCTGTTATTTTAGGCTAGGGCATTAATTCACTTGTTTAACATTCCCTTCCATACACATATAAAGTGATATTTCCCGGCTTTCGCTACCGAGAAAGGTATACATCTCTATGGCAACATCGACATATCAAATTATCATCACCTCTGCAAGGAAATAACGGGCAgggctgctgctgctactggtactgctatatttatttattttccctcatGCGTCCTGCAACGTTGTGGGAAACGCGATCGAGCCAGGCAGAGATAGCACTATATAATGGATTAATGGTCGTGTGAGCTGCATATGAAAGAAAGGCTTCCAATGCTGAATATGTCCACTCCCAGTGACCTCAAGTCTCCCTGCATGACGCGGAACGGCATGGTCAAGCTGCCCCCCCAGCCCAACCGCCTCGGTTCAGCCAGCATCACTAAAGGCACTCCAGCTGCCAAGAATCGCCTGTGCCAGTCATCCTCCGTGCCCACCATCTTGCCTCCGCCTAGCCTCCCATATCACCTGGATCCCCTGCCCACAGCAGCCTCGCTGCTTGGGCCAGACCTGGACACGAGTCCCGTGACTGCGATCAAACCCCCACTCCGGCAATTCCCCAAACCCCTACTGGAGAGACAACTGATACTGGACGAGAAGGTGCTGAACCGGCTCTTATGGTACTTCACCACAGCAGAAAAGTGTATTCTAGCCCAGGTGTGCAAGACGTGGCGAAAAGTGCTCTATCAGCCCAAGTTCTGGGAGGGGGTGACACCCATCCTCCATGCCAAGGAACTCTACACTATCCTGCCCAATGGGGAGAAGGAGTTTGTTAGCCTGCAGGCGTTTGCACTCAGAGGCTTCCAGGCCTTCTGTCTGGTGGGAGTCTCGGATTTGGACATTTGTGAGTTCATCGACAACTATCCGCTGTCAAAGAAGGGAGTGAAGTCTGTCAGTCTTAAGAGGTCGACCATAACAGATGCAGGACTTGAGGTGATGCTGGAGCAGATGCAGGGCCTAATGCACCTTGAACTCTCCGGCTGCAATGACTTCACAGAAGCCGGCTTGTGGTCCAGCCTGAACGCGCGGCTTACCTCGCTCAGCGTCAGCGACTGCATCAACGTGGCAGACGATGCCATCGCTGCCATTTCTCAGCTCCTTCCTAACCTATCAGAGCTCAGCCTGCAGGCCTACCATGTGACCGACACGGCCATGGCCTACTTCACGGCCAAGCAAGGCTACACCACCCACACGCTGCGTCTGAACTCCTGCTGGGAGATCACTAACCATGGCGTAGTCAACATGGTGCACAGCCTGCCCAACCTCACCTCCCTCAGCCTGTCGGGGTGCTCGAAGATCACAGACGATGGTGTGGAATTGGTTGCTGAGAATCTAAGGAAGCTCCGGAGTCTGGATCTGTCATGGTGTCCTCGCATCACCGACATGGCCCTGGAGTACATCGCGTGCGACCTGCACAAGCTGGAGGAGCTGGTTCTGGACCGGTGTGTGCGGATCACAGATACAGGCTTGGGCTACTTATCTACCATGTCAACACTGAGAAGTCTCTACCTGCGCTGGTGCTGTCAAGTGCAAGACTTTGGGTTACAGCATTTATATGGCATGAGGAGTCTTCGTCTTCTTTCTCTAGCAGGCTGCCCTCTGCTGACTACTACTGGTCTATCAGGCTTGATTCAACTACAGGACCTGGAGGAGCTGGAACTGACCAACTGCCCGGGCGCCACCGCCGAACTCTTCAAATACTACTCCCAACATCTGCCACGCTGCATGGTCATCGAGTAGAGCAAAACGAGTTTTACGGGCACCAGCACCCAACACATCACCAAAACCTCCTCCTTCAGACTGATGATAAACCCTATTTCATCCTGGACCCACAGGGAGAGAAATTGAAaaggaaggttttttttttttttcttgtttttttccggAGGGGTGAAAATTGAAAGTGGGAAGATAAAAAGGAAATCTGAAAGAAAAATCCTGTCGGAATGGGTCAGGACTGGCAAGAGAGAGGGAAAATGTTCAAAGCGCAGTGGGTCAGAGGCTAGATCTTTCATTAAATAACATGACACATGAGTCAGCCCCTACACATACATGAAACATGTTCCTCCACTGAACTGTGAGACTAGCTTCCGTGTCTCATCCAAAAACTGTTTATCTTGAAGTGACAAAGGTGTGTGCCGACTGTTTGAGCTGTCTCTCATATCCAGGGAAAGATTGAGAGGACGTTTAAGGAAAGGAAAGAGGTTAAGGAGCCACTGCAACAGGGTCTCTTCGCTTTTGTCAAGCGGCATCTGGGTTTCTCGCTCCATTCAGTGGTGCTGCCTCTCCATCTTTGTGTcttaacaaagaaagaaaaaaaaa

Function

symbol description
fbxl16 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL16 (F-box and leucine rich repeat protein 16).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-120215-180 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL16 (F-box and leucine rich repeat protein 16).

Ensembl:

ensembl_id ENSDARG00000060915

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051448 True 2369 mRNA 0.51 6 28634467 28665291

Neighbor

gene id symbol gene type direction distance location
XLOC_026394 NA coding downstream 131974 28444234 ~ 28502493 (-)
XLOC_026395 NA coding downstream 172116 28459334 ~ 28462351 (-)
XLOC_026393 rbfox1 coding downstream 206269 27982269 ~ 28428198 (-)
XLOC_026391 NA coding downstream 707414 27916224 ~ 27927053 (-)
XLOC_026392 NA coding downstream 710451 27921787 ~ 27924016 (-)
XLOC_026397 NA coding upstream 30471 28695762 ~ 28698856 (-)
XLOC_026398 gsg1l coding upstream 53526 28718817 ~ 28750495 (-)
XLOC_026399 NA coding upstream 87022 28752313 ~ 28756620 (-)
XLOC_026400 BX510989.1 coding upstream 136075 28801366 ~ 28905492 (-)
XLOC_026401 si:ch211-76l23.4 coding upstream 156774 28822065 ~ 28828569 (-)
XLOC_026387 NA non-coding downstream 851175 27777362 ~ 27783292 (-)
XLOC_026403 BX510989.3 non-coding upstream 193993 28859284 ~ 28859400 (-)
XLOC_026405 BX510989.2 non-coding upstream 234304 28899595 ~ 28909948 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G273766 NA non-coding CI01000069 null 1517658 ~ 1541835 (+)
bowfin (Amia calva) AMCG00018310 fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107568127,LOC107690242,LOC107733860 coding CM030135.1 CM030135.1 7883207 ~ 7894569 (-)