G742748


Basic Information

Item Value
gene id G742748
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71580417 ~ 71638350 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU843215
gtatctggtgtgaccaccactggcctcatgcagcgcgacacatctccttcgcatagaattgatcaggctgttgattgtgacctgttcattgttgtcccactcctcttcaatggctgtgggaagttGCTGAAAATTCATAGGAACtgtacatgtcaatccagagcatgcCAAaaaatgctcaatgggtgacatgtctggtgagtatgcaggccatggaagaactgggacattttcaggttccaggaattgtgtgcagGTCCTTGCGACATAGAGCCGTGCGTTATCATGCTGAATCATGAGGAGTttgtggcggatgaatggcacgacaatgggcctcaagatctcgtcacggtaactctgtacattcaaattaccatcgataaaatgcaattgtgttcattgcctgcccaaaccataaccccaccaccaccaccatggggcactctgctcACAACGTCATCAGAAAAcagctcacccacacaacgccatacacgtggtctgcggttgtgaggctggttggatgtacagccaaattctctgaaacaacgcttatggtagagaaattaacattcagttctctggcaacagctctggtgagcATTCCAgtagtcagtatgccaattgcatgctgcctcaaaacttgagacatctgtggcattgtgttgtgtgacaaaactgcacattttagagtggccttttattgtccccagcagaagatgcacctgtgtaatgatcatgctgtttagtcagataactgatatgctacacctgtcagggggatggattatcttggcaaaagagaaacgctcactaacagggatataaacaaatttgtgcacacaatttgagggaaataagctttttgtgtgtatggaacatttattggatattttatttcagctcatgaaacttgggaccaacactttacatgatgcattcatatttttgttcagtgtagcagTCAGTTCTGGTGTGCTGAATATCAAATTGAGAGGCTAGCCATGGTTAGCATGTGTAGCATCAGCATAGCCAGGTCCATTCATTAGTAGAATCAAGAGGGGTTTTAAAGACATATTCATGTTACCACTCTTTCATTTATAACTAATTGAGAGTAAGAGAATGCAGATTTCAGTGATGCCCACTCAACTATGATCACAATGCTCAAAGGAGAACAGCAGACCTAACTTGAACCCCCCAGTAATAGACAGTTCGCAGTAATTGTGCTGCCTTCGTACTCAAATGATTCTGTTCAGAGATTGATCCTATCACTGATTTGAAACTATAAACCATCAAGTAATGAAAGCCTCTCGCGTTAGGTCCCCGGAAGTTAAACTATTGCAAGATAATTGAATGCAATTCTTTGTTTACAAGTGACATATTGGAAAATAGAAAAAAAGTGTTTATGTTTTCACATATGAACAATCACAACTTTTCCATGAGATTTGGGGAAAATAGGAACATTTCCGTTGTTATATATAGTGCTCCACATACTTTCTATCTGCTTACTGCTGAAAAAATGTACATCAATGACAACATTTTCTTCTGTCGTGTTTTCCCATTTTTTCTGGGAAAAGAGTTGTCGTACTGACCGTACTGTCACTGGAAATGGACACTCTTCACAGGAGTCTGCTGTAACTCAGCCCCCCTCTTAATCACCACTTTCAATAGAATAGACAAACAAGCAAGATGATCCACCAAACTTAAAGTTAGTTTATGTGGGTGTTGTTCAATTTTGTTCCATGACCATGGCTTTTAACTGCTACAAAAACACTCATTAGCACAAGTCCCCTGTGATCGTAAACTATTCTCTATTGGAAACTAGTGGAGTACAAACATTGTCAAGGTGGTGTTCTAAAtattgattgaaaagtgtaaatACCAGATCAAAATGCCATTAAGAAATTCAATCTCGCTCATATGTTGATATGTTTatagtatgtaaaaaaaaaaaaagacaaaaaaatgtatccaTTACTGCTGTTGCACCATAAGGGAATTGGAGGACAAGGGAGCTGCAGACTTACCATACGAGCACACAATGGCCTACCCCAAGAGTTGTCCATTAGTTTGTGTTGTTATCCAAGTGGACCTCAAGTGTCTTCCAGCTTCTATTTAATTTTAGGACCGGACACAAGAGTAGAATTTGTTAGATACCAGAGGCAGTT

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU843215 True 2165 lncRNA 0.41 2 71580417 71638350

Neighbor

gene id symbol gene type direction distance location
LOC110530474 LOC106569352 coding upstream 168121 71135382 ~ 71412296 (+)
LOC110530469 LOC106569124 coding upstream 605103 70936404 ~ 70975314 (+)
LOC110530467 ub2v2 coding upstream 735519 70841507 ~ 70844898 (+)
LOC110530465 LOC106569128 coding upstream 739067 70830711 ~ 70841350 (+)
LOC110530464 mapre2 coding upstream 808857 70758004 ~ 70771560 (+)
atg9b LOC106569346 coding downstream 20758 71659108 ~ 71682417 (+)
LOC110530483 obscn coding downstream 89438 71727788 ~ 71818121 (+)
c8h1orf35 cssa14h1orf35 coding downstream 189687 71828037 ~ 71832556 (+)
wnt9a wnt9a coding downstream 269209 71907559 ~ 71934937 (+)
LOC110530489 iba57 coding downstream 459042 72097392 ~ 72103866 (+)
G742802 NA non-coding upstream 18375 71557179 ~ 71562042 (+)
G742611 NA non-coding upstream 375611 71188546 ~ 71204806 (+)
G742610 NA non-coding upstream 385771 71189286 ~ 71194646 (+)
G742567 NA non-coding upstream 454117 71126098 ~ 71126300 (+)
G742477 NA non-coding upstream 568142 71011860 ~ 71012275 (+)
G742853 NA non-coding downstream 14133 71652483 ~ 71652835 (+)
G742854 NA non-coding downstream 14856 71653206 ~ 71653434 (+)
G742860 NA non-coding downstream 67953 71695602 ~ 71715616 (+)
G742573 arf1 non-coding downstream 195277 71833627 ~ 71837764 (+)
G742095 NA other upstream 953673 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 2042141 69536400 ~ 69538276 (+)
G739708 NA other upstream 2575301 69004337 ~ 69005116 (+)
G739670 NA other upstream 2673452 68903365 ~ 68906965 (+)
G739648 NA other upstream 2721664 68858383 ~ 68858753 (+)
LOC110530976 LOC106569323 other downstream 904376 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 996534 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 1222058 72779485 ~ 72872336 (+)
G744696 NA other downstream 1223906 72862256 ~ 72864703 (+)

Expression


Co-expression Network