G742860


Basic Information

Item Value
gene id G742860
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71695602 ~ 71715616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU843350
ctgcTTTATTATGtcaatgaaatatatatattttttacgttgttggcaaactgatatgtgacacgtattaatgccaaaataacatgcaaaacaggcaaatgTCTggctaaaaatgtggggctctgcccccacctgccctgaatgacaggtcacTGCTCTTAACtcaatctgtgtccaggaaaccattCCGACATGTTTCAGCAAAGCCTAAACTGTCGGCCTAACAGAACAACAGAGAAatgatatttttttaaagaacaatAAACACAAAAACGAAAAACGTAGAGCTCTCAAAAACTTCCTAAACTGCCATGAAATTACATATTTTACACACAGTGTCTTTTGAAAACTTATTTTGCAGTTTATTAGTGCAGTAAACATGAACTGGAAATAATTTTCGGTAGTTAAAATTCAAAGATTGGCATGTAAGAATAGGTACATTATTACAAACAATGATagctacaaaatacaaaacaattcatAATGTAGACAAAAGAGTTACCAGAAgcatttttttaaagaagctcAAGGTTTCATGTTCACCCATTAACAACAACTTTGAGTGCTTTTGAAGTTTATTTTATTGGGGTTATCCAAAGGGTGTGTTGTGCTGTTCGATGCAGGGAGAGTTCCAACATGGTTTACTCCGCTAGCTCCAGCAATGCCGGAGCCAAACCCAGGACGAGAGCCACTCCCAGGACGACCTCTCCAACCCCCCTTGGAATCTTTTCTACCCATCTTAGGGCCTCCGCTGTCCTTGCCTCTTCTTGTCCGAATCTTCTGAACTTCTGCCTCCATGTATTCACAAGAAATGTCAGACCGGTCAGTGTTGAGGGTGTTGCCAATCTCCAGAATCGGATGTCTGACCTCCATGCTGCACATCATTCGTTTCCCATTTTTCTTCAGAGGGCATGGTTGGCCTCGCTGCCCCTGTGCCTTACTGCAGAGCGTCTCCTGCAGGGGGAAGCTCAACCTTACAGACACCTCAGACTGGTCCACATCCTCTGTATTCAAAGTCTCGACTTCCAGCTGGTTCAGAAGCGGATGGAAAGCCTGCTCTTCCATAGGAAGCAGCTGATTTGAAGCAGCTGTGATGATGTCTTCATACCTGGTCTCAGTCTGGGTCTGACCTCTGACCAGCAGGTTAGCCACAGCGAGCAAGAGGAGAGATCTCACCAGAGCCTTCATCTTCATGTCTGATTCCTACTCTGAGCACCA
>TU843344
gaccatgtttgtatgctgcTTTATTATGtcaatgaaatatatatattttttacattgttggcaaactgatatgtgacacgtattaatgccaaaataacatgcaaaacaggcaaatgTCTggctaaaaatgtggggctctgcccccacctgccctgaatgacaggtcacTGCTCTTAACtcaatctgtgtccaggaaaccatcCCGACATGTTTCAGCAAAGCCTAAACTGTCGGCCTAACAGAACAACAGAGAAATTATCTTTTTTTTAAAGAACAATAAACACAAAAACGAAAAACGTAGAGCTCTCAAAAACTTCCTAAACTGCCATGAAATTACATATTTTACACACAGTGTCTTTTGAAAACTTATTTTGCAGTTTATTAGTGCAGTAAACATGAACTGGAAATAATTTTCGGTAGTTAAAATTCAAAGATTGGCATGTAAGAATAGGTACATTATTACAAACAATGATagctacaaaatacaaaacaattcatAATGTAGACAAAAGAGTTACCAGAAgcatttttttaaagaagctcAAGGTTTCATGTTCACCCATTAACCACAACTTTTGAGTGCTTTTGAAGTTTCTTTGATTGGGGAGATATCTTGCAGTTATCCAAAGGGTGTGTTGTGCTGTTCTATGCAGTGAGAGTTTCAACATGGTTTACTCCGCTAGCTCCAGCAATGCCGGAGCCAAACCCAGGACGAGAGCCACTCCCAGGACGACCTCTCCAACCCCCCTTGGAATCTTTTCTACCCATCTTAGGGCCTCCGCTGTCCTTGCCTCTTCTTGTCCGAATCTTCTGAACTTCTGCCTCCATGTATTCACAAGAAATGTCAGACCGGTCAGTGTTGAGGGTGTTGCCAATCTCCAGAATCGGATGTCTGACCTCCATGCTGCACATCATTCGTTTCCCATTTTTCTTCAGAGGGCATGGTTGGCCTTGCTGCCCCTGTGCCTTACTGCAGAGCGTCTCCTGCAGGGGGAAGCTCAACCTTACAGACACCTCAGACTGGTCCACATCCTCTGTATTCAAAGTCTCGACTTCTAGCTGGTTCAGAAGCGGATGGAAAGCCTGCTCTTCCACAGGCAGCAGCTGATTTGAAGCAGCTGTGATGATGTCTTCATACCTGGTCTCAGTCTGGGTCTGACCTCTGACCAGCAGGTTAGCCACAGCGAGCAAGAGGAGAGATCTCACCAGAGCCTTCATCTTCATGTCTGATTCCAACTCTGAGAACCACC
>TU843351
gaccatgtttgtatgctgcTTTATTATGtcaatgaaatatatatattttttacattgttggcaaactgatatgtgacacgtattaatgccaaaataacatgcaaaacaggcaaatgTCTggctaaaaatgtggggctctgcccccacctgccctgaatgacaggtcacTGCTCTTAACtcaatctgtgtccaggaaaccatcCCGACATGTTTCAGCAAAGCCTAAACTGTCGGCCTAACAGAACAACAGAGAAATTATCTTTTTTTAAAGAACAGTAAACACAAAAACGAAAAACGTAGAGCTCTCAAAAACTTCCTAAACTGCCATGAAATTACATATTTTACACACAGTGTCTTTTGAAAACTTATTTTGCAGTTTATTAGTGCAGTAAACATGAACTGGAAATAATTTTCGGTAGTTAAAATTCAAAGATTGGCATGTAAGAATAGGTACATTATTACAAACAATGATagctacaaaatacaaaacaattcatAATGTAGACAAAAGAGTTACCAGAAgcatttttttaaagaagctcAAGGTTTCATGTTCACCCATTAACAAGAACTTTGAGTGCTTTTGAAGTTTATTTTATTGGGGAGATATCTTGCAGTTATCCAAAGGGTGTGTTGTGCTGTTCGATGCAGGGAGAGTTCCAACATGGTTTACTCCGCTAGCTCCAGCAATGCCGGAGCCAAACCCAGGACGAGAGCCACTCCCAGGACGACCTCTCCAACCCCCCTTGGAATCTTTTCTACCCATCTTAGGGCCTCCGCTGTCCTTGCCTCTTCTTGTCCGAATCTTCTGAACTTCTGCCTCCATGTATTCACAAGAAATGTCAGACCGGTCAGTGTTGAGGGTGTTGCCAATCTCCAGAATCGGATGTCTGACCTCCATGCTGCACATCATTCGTTTCCCATTTTTCTTCAGAGGGCATGGTTGGCCTTGCTGCCCCTGTGCCTTACTGCAGAGCGTCTCCTGCAGGGGGAAGCTCAACCTTACAGACACCTCAGACTGGTCCACATCCTCTGTATTCAAAGTCTCGACTTCTAGCTGGTTCAGAAGCGGATGGAAAGCCTGCTCTTCCACAGGCAGCAGCTGATTTGAAGCAGCTGTGATGATGTCTTCATACCTGGTCTCAGTCTGGGTCTGACCTCTGACCAGCAGGTTAGCCACAGCGAGCAAGAGGAGAGATCTCACCAGAGCCTTCATCTTCATGTCTGATTCCAACTCTGAGAACCACC
>TU843341
CGTTCATACTGTCAGTCTCACTATCTCAATACTCACAGTCTCGACTTCCAGCTGGTTCAGAAGCGGATGGAAAGCCTGCTCTTCCATAGGAAGCAGCTGATTTGAAGCAGCTGTGATGATGTCTTCATACCTGGTCTCAGTCTGGGTCTGACCTCTGACCAGCAGGTTAGCCACAGCGAGCAAGAGGAGAGATCTCACCAGAGCCTTCATCTTCATGTCTGATTCCAACTCTGAGAACCACC
>TU843343
catgtttgtatgctgcTTTATTATGtcaatgaaatatatatattttttacattgttggcaaactgatatgtgacacgtattaatgccaaaataacatgcaaaacaggcaaatgTCTggctaaaaatgtggggctctgcccccacctgccctgaatgatagGTCACTGCTCTTAACtcaatctgtgtccaggaaaccatcCCGACATGTTTCAGCAAAGTCTAAACTGTCGGCCTAACAGAACAACAGAGAAATTATCTTTTTTTAAAGAACAATAAACACAAAAACGAAAAACGTAGAGCTCTCAAAAACTTCCTAAACTGCCATGAAATTACATATTTTACACACAGTGTCTTTTGAAAACTTATTTTGCAGTTTATTAGTGCAGTAAACATGAACTGGAAATAATTTTCGGTAGTTAAAATTCAAAGATTGGCATGTAAGAATAGGTACATTATTACAAACAATGATagctacaaaatacaaaacaattcatAATGTAGACAAAAGAGTTACCAGAAgcatttttttaaagaagctcAAGGTTTCATGTTCACCCATTAACCACAACTTTTGAGTGCTTTTGAAGTTTCTTTGATTGGGGAGATATCTTGCAGTTATCCAAAGGGTGTGTTGTGCTGTTCTATGCAGTGAGAGTTTCAACATGGTTTACTCCGCTAGCTCCAGCAATGCCGGAGCCAAACCCAGGACGAGAGCCACTCCCAGGACGACCTCTCCAACCCCCCTTGGAATCTTTTCTACCCATCTTAGGGCCTCCGCTGTCCTTGCCTCTTCTTGTCCGAATCTTCTGAACTTCTGCCTCCATGTATTCACAAGAAATGTCAGACCGGTCAGTGTTGAGGGTGTTGCCAATCTCCAGAATCGGATGTCTGACCTCCATGCTGCACATCATTCGTTTCCCATTTTTCTTCAGAGGGCATGGTTGGCCTTGCTGCCCCTGTGCCTTACTGCAGAGCGTCTCCTGCAGGGGGAAGCTCAACCTTACAGACACCTCAGACTGGTCCACATCCTCTGTATTCAAAGTCTCGACTTCTAGCTGGTTCAGAAGCGGATGGAAAGCCTGCTCTTCCACAGGCAGCAGCTGATTTGAAGCAGCTGTGATGATGTCTTCATACCTGGTCTCAGTCTGGGTCTGACCTCTGACCAGCAGGTTAGCCACAGCGAGCAAGAGGAGAGATCTCACCAGAGCCTTCATCTTCATGTCTGATTCCAACTCTGAGAACCACC

Function

NR:

description
cathelicidin antimicrobial peptide precursor

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU843350 False 1218 TUCP 0.43 5 71695602 71706542
TU843344 False 1250 TUCP 0.43 5 71704643 71715616
TU843351 False 1248 TUCP 0.43 5 71704643 71715616
TU843341 False 242 lncRNA 0.50 2 71706303 71715616
TU843343 True 1246 TUCP 0.43 4 71713728 71715616

Neighbor

gene id symbol gene type direction distance location
atg9b LOC106569346 coding upstream 24005 71659108 ~ 71682417 (+)
asic1c LOC106569349 coding upstream 66048 71480964 ~ 71640255 (+)
LOC110530474 LOC106569352 coding upstream 294007 71135382 ~ 71412296 (+)
LOC110530469 LOC106569124 coding upstream 730989 70936404 ~ 70975314 (+)
LOC110530467 ub2v2 coding upstream 861405 70841507 ~ 70844898 (+)
LOC110530483 obscn coding downstream 12172 71727788 ~ 71818121 (+)
c8h1orf35 cssa14h1orf35 coding downstream 112421 71828037 ~ 71832556 (+)
wnt9a wnt9a coding downstream 191943 71907559 ~ 71934937 (+)
LOC110530489 iba57 coding downstream 381776 72097392 ~ 72103866 (+)
LOC110530494 LOC106569334 coding downstream 430737 72146353 ~ 72155430 (+)
G742854 NA non-coding upstream 52869 71653206 ~ 71653434 (+)
G742853 NA non-coding upstream 53468 71652483 ~ 71652835 (+)
G742748 NA non-coding upstream 67953 71580417 ~ 71638350 (+)
G742802 NA non-coding upstream 144261 71557179 ~ 71562042 (+)
G742573 arf1 non-coding downstream 118011 71833627 ~ 71837764 (+)
G742904 NA non-coding downstream 128175 71843791 ~ 71844084 (+)
G743613 NA non-coding downstream 221815 71937431 ~ 71937872 (+)
G743630 NA non-coding downstream 232075 71947691 ~ 71947980 (+)
G742095 NA other upstream 1079559 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 2168027 69536400 ~ 69538276 (+)
G739708 NA other upstream 2701187 69004337 ~ 69005116 (+)
G739670 NA other upstream 2799338 68903365 ~ 68906965 (+)
G739648 NA other upstream 2847550 68858383 ~ 68858753 (+)
LOC110530976 LOC106569323 other downstream 827110 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 919268 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 1144792 72779485 ~ 72872336 (+)
G744696 NA other downstream 1146640 72862256 ~ 72864703 (+)
G744697 NA other downstream 1151485 72867101 ~ 72868382 (+)

Expression


Co-expression Network