G742573 (arf1)


Basic Information

Item Value
gene id G742573
gene name arf1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 71833627 ~ 71837764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU843014
AGTCTCTAATCACTTTAATTACAGTGCTTTTCTCCaaaaaattaaagctgaaataactttacaaaaaaaaaagtttagaCAAAAGTTCTGCTAAAGAGATTAACGTTTCAACAAAAGGTTCAGGCAATCAGTTTTAATCCAATGCCTTGCTTTAAAAGAAAGACTAAGAAATGTCCATAGCACTCTGGTGGAATAACACCCAGAACCTTTTGATAAGAAGCACAAAAGGTTGTAATGGAACAGCATGTTTCTTTGACATGAGGACAAAAGTATCCCCCCAGAACTTAGCCAAGGACAACATGAGCTACGAAGGACAAAAAAATACTAGTGCCCACTAAGTAAAAAATATGGAGTTCATACATTTCCTATTGCCACTGACATTGATGCATGCCTTGTTCCAAAACTATTAATATACTTGAATCATTCCCAATAAAAAGGGATGAAAACAAGGTCTTCAGGTCATGATGGAGGACATCAGAATTCAGAATACAACTGCTTTTGTCATATCAGAGCATCATACAGCATATACCTTCGAGTGCAGGGGTAAACAACCAGGTGTCTGCGATGGGGGTTCAATGTTTTTATGAATATCGCTAGCAACAGACTAAACACATTTTGAATGACATACCTACAGTAGAAAAGAGGAAAATATCTTATTTCTCATGATGTCAACTTTATTTCTCCACTACTAATATTGAACaaattacactcactggagtatCTGACATTGGCTTTGAAAAATAGGCTACCAGTGTGGTAAGTGCTACTGGCTGCTGGTAAGTGTTCTTGACTTGGACATACATTTTTGCCAACCCATGGATAGCAAGCTAAACAGTTGCGCTTAGCGAAAGTGTTTGCAGTTAGCCTATTAGCTAGAAAGGtatgttagagtttacacttcctcttccaattatAAATGTGGGGAGGTCAAACTAATGAAAAAACATTTACCAAATCTATtaatttcaaaatgttttgaatACTTCGCCTTGACATTCACCTGATAGGACATgaggaaaaaaatgttttggctAACATAATGGGAGTCCCTGGTTCAGTGGTTTGCCTGGAAGGGGGAAAGATAAGGTTGAAGACCCCTGAGTTACAAGGTTGTTGTGGCGCTAAGTCATTGTGATGGTGATGTTGAGGACATCAAGGTATCCCAACCCTTGAGCACCTGCAGCTGACAAGAGTAATGACAATGCttatttagacaaaaatgttTAACAATCAATTAGATAGTCCCGCTGACAATCAACGTGTTCGAGATATTCGATTCTGCACAGAACATGGATTATAGCAAATGGATAGGCAGGAATTCTGCTTCTCTAGGCATTGTGAAAATCTGTTGATTTGCACAGAATCTGTGTGTCTTAAACATGCATTTGTCCAACATACAGACCACATCATGCACTTTTTTTGCTATTAAATTCAGGCTCACTGCGACAAGGGCAGTACACATGATTATTAACCTGAGCCACTTTCATACATCATAATGCTGACCAGACAGTACCTCTGTCCATCACAAAGCAGGTGAATGATGAGATTCATGGAGGAACATAGTTACTCTGCATGGCAGCCACTTCTCAACGAAAGCCAACATGATCTGACAAACAACAAAAGCCGGTAAGTGTCGACAAGAGTTTGACTTTGAAGCCCACTAACCTGTTTTAGGCTTCATCTCAATAATATGCTCTTCAGTGTTTTGCTAAATGGTATTTTGGGGGAGCAGGATATTGTAGCCGTCAGAGGTGTTAAACCATAATTGTTGAAAGTTGTACATCTGTATGTATGCTTAATTCAGGAGAAACACTCCTTTCAGTAAAAATTACCAGCAGACTTATGTAAAAAAGTCAATAAACATAGGGTCCCATCAATTATTTTTTGCCTCCCTTTTCTATTTACTAGACATGCATGTCTGCCCAAGGGTCAAGAGGAGGAAATAACCAAGGTAGATTTTTAAAAGTCTGCAATAAGCTGCCTCTTAAACCCCTCACCATCCAAAACAAGACTATTTACATTAAATaagaaacccagacagctttcCATGATTGGGTTATTATCCTCCCTGGCCCATATGGTGTATTGTTGTAACGAGAGATGAGAAATGAGGGCAGCTTTCCAGTAGGTACTTTTGACAAAAGTAACTTAATTTTCAACATCAGAAGAGTACAAAGCAAAGATAGAGAAGATACAGTGTTAcacttttcacactactgagccgagCCAAACTGAGACGAGCAGAGCTGTACTGCGCCAGCAGGGCTGTACTGCGCCAGCCTGGTAACTCTTCTACCACACAGTTGCTAGAACCATGCAGGAAAGGACAACGTGAAAGAAAATCATCTGAGCCACCGTACGGTTTGAGTCAGCACGATAGAGTGAAAAGGGTATATGTGAGTTGAGGAGGACAGTGGATTATGATGATTAGGCCTATTTCTGGTTTTTTAACTGATTAGACAACCAATCCAGTCCTTCATAGAGACCGTCTCCGCTGGTGGCACAGGTGGCCTGGATGTACCAGTTTCTATGGCGGAGGGAGTGCAGTCCCAACTTGTCTGTGAGTTCGGCCGCATTCATAGCATTTGGGAGGTCCTGTTTGTTAGCGAATACTAATAAGACTGCCTCTCGTAGTTCATCCTCTGCCAACATTCTCATCAGTTCTTCGCGGGCTTCGTTCACTCGCTCTCTGTCATTGCTGTCCACAACAAAGATGAGACCCTGTGTGTTCTGGAAATAGTGACGCCACAACGGTCTAATTTTGTCTTGACCACCGACATCCCACACTGTAAAACTTATGTTCTTGTACTCGACTGTCTCAACATTAAAACCTATAGTTGGAATGGTAGTTACAATTTCTCCAAGTTTGagtttgtacaggattgttgtttTACCAGCAGCATCGAGACCCACCATGAGGATCCTCATCTCTTTCTTGCCAAATGCTTTAAAGAGGCTTGCAAATAAATTCCCCATAGTGAAAGACGGATTCAACTTTGGCAGTAGGAATAAGTTGTTTTCAATTCTTTCCTCTTTAAGGCGTTTCCTTCCTCAAGATGTCGGGTTATTATTTGGCCACGTCAGAGCTTCCAGAACGACTTCCGTGAAACAGAGCGTTTGGT

Function

symbol description
arf1 Predicted to enable GTP binding activity. Acts upstream of or within semicircular canal development. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; head; pharyngeal arch 3-7; and semicircular canal. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARF1 (ADP ribosylation factor 1).

NR:

description
ADP-ribosylation factor 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU843014 True 3122 lncRNA 0.40 5 71833627 71837764

Neighbor

gene id symbol gene type direction distance location
c8h1orf35 cssa14h1orf35 coding upstream 1071 71828037 ~ 71832556 (+)
LOC110530483 obscn coding upstream 15506 71727788 ~ 71818121 (+)
atg9b LOC106569346 coding upstream 151329 71659108 ~ 71682417 (+)
asic1c LOC106569349 coding upstream 193372 71480964 ~ 71640255 (+)
LOC110530474 LOC106569352 coding upstream 421331 71135382 ~ 71412296 (+)
wnt9a wnt9a coding downstream 69795 71907559 ~ 71934937 (+)
LOC110530489 iba57 coding downstream 259628 72097392 ~ 72103866 (+)
LOC110530494 LOC106569334 coding downstream 308589 72146353 ~ 72155430 (+)
LOC110529137 LOC106569331 coding downstream 353403 72191167 ~ 72219447 (+)
LOC110530496 LOC100136504 coding downstream 503732 72341496 ~ 72345654 (+)
G742860 NA non-coding upstream 118011 71695602 ~ 71715616 (+)
G742854 NA non-coding upstream 180193 71653206 ~ 71653434 (+)
G742853 NA non-coding upstream 180792 71652483 ~ 71652835 (+)
G742748 NA non-coding upstream 195277 71580417 ~ 71638350 (+)
G742904 NA non-coding downstream 6027 71843791 ~ 71844084 (+)
G743613 NA non-coding downstream 99667 71937431 ~ 71937872 (+)
G743630 NA non-coding downstream 109927 71947691 ~ 71947980 (+)
G743631 NA non-coding downstream 110648 71948412 ~ 71948695 (+)
G742095 NA other upstream 1206883 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 2295351 69536400 ~ 69538276 (+)
G739708 NA other upstream 2828511 69004337 ~ 69005116 (+)
G739670 NA other upstream 2926662 68903365 ~ 68906965 (+)
LOC110530976 LOC106569323 other downstream 704962 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 797120 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 1022644 72779485 ~ 72872336 (+)
G744696 NA other downstream 1024492 72862256 ~ 72864703 (+)
G744697 NA other downstream 1029337 72867101 ~ 72868382 (+)

Expression


Co-expression Network