XLOC_026400 (BX510989.1)


Basic Information

Item Value
gene id XLOC_026400
gene name BX510989.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28801366 ~ 28905492 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051453
AAGGAATCATGCAAGGATGCAAGCTGAAGGAAAGGACAACTCTCACATCAGTGCATTACTAATTGTTTGACTTCATCATCAAGCACACCagGTGGTGCAGTGGTACAGTGGATAGCTCTGTTGCCTCCCAGCAAAAATGTTTCTGGTtggagcatcggctgggtcagttggcatttctgtgtgaagtttttatgttctccacttgttggcgtgggtctcctccgggtgctccggtttcccccacaagacatgcggtacagatgaattggctcagattgtgaaGGACCGGGAATGcaacaccagttactcttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACCACATCAAGATCTGCGGTCAGTTCAAAGGATGTTTTGCattggacagttttttttttggatttgacCCTTGCTCGCCCCTGACCTCATTCTTGGACTGCCCTGTTGgattttcatttatttaatttaaattttttatatatttttttggttctaggtaaatgctaataaatatttagttgtaattatttaagtaatatatttttgttaaatatgcaatttctgtgtttgttctgtctactcatacttgtttatcttgtttctgtaattatcatttgtttatttgaccccTGCCTCGCCTCTGATCTTGTTTTTGGATTGCCCTTTATTTATCTCTTTAATTATTGGTTCTGGCTATatggttataaaatatttg
>TCONS_00053041
GTTGAACTAACTGGAAGCAGGGAACCATACTAATAAAGTTCCTTAagcagGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACCACATCAAGATCTGCGGTCAGTTCAAAGGATGTTTTGCattggacagttttttttttggatttgacCCTTGCTCGCCCCTGACCTCATTCTTGGACTGCCCTGTTGgattttcagtttgttttatttattttttttttttttggttctgggtagatgataataaatatttagttgtaattatttaaataatatgtttttgttaaatatgcgatttctgtgtttgttctgtctacTCGTACTTGTTTAATCTTGTTTCTgtaattatcatttgtttatttgacccttGCCTCGCCTCTGATCTTGTTTTTGGATTgccctttatatatatttttaattattggttCTGGGTATatggttataaaatatttgttaatttaattaatatgcattttataaaaaatatatatatttttttgtgtttattctgtatctatttatctaatttgtatatacatgtgtgtttgtatgttcttcttatTCTGTATATCCACTTACctaatttttacttttatatttatttgcatttaatttgtgataattctgtatgcatttatttatctaattcatatatttatttgtattgcattgatccatctgttgttgtttttttgtatgcaactatttatataatttatatacattatatatttgtatttatcaatttatattcttcctttaaagcaatttttttaaataaagcaatttaaactaa
>TCONS_00051461
TTTTTTTCAAACGAGGAAGTGAAGTCAAGTCCGCCATTTCATCTTCTTCTTTATATCggAAAAGAAAGGAATCATGCAAGGATGCAAGCTGAAGGAAAGGACAACTCTCACATCAGTGCATTACTAATTGTTTGACTTCATCATCAAGCACACCagGTGGTGCAGTGGTACAGTGGATAGCTCTGTTGCCTCCCAGCAAAAATGTTTCTGGTtggagcatcggctgggtcagttggcatttctgtgtgaagtttttatgttctccacttgttggcgtgggtctcctccgggtgctccggtttcccccacaagacatgcggtacagatgaattggctcagattgtgaaGGACCGGGAATGcaacaccagttactcttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACCACATCAAGATCTGCGGTCAGTTCAAAGGATGTTTTGCattggacagttttttttttggatttgacCCTTGCTCGCCCCTGACCTCATTCTTGGACTGCCCTGTTGgattttcagtttgttttatttattttttttttttttggttctgggtagatgataataaatatttagttgtaattatttaaataatatgtttttgttaaatatgcgatttctgtgtttgttctgtctacTCGTACTTGTTTAATCTTGTTTCTgtaattatcatttgtttatttgacccttGCCTCGCCTCTGATCTTGTTTTTGGATTgccctttatatatatttttaattattggttCTGGGTATatggttataaaatatttgttaatttaattaatatgcattttataaaaaatatatatatttttttgtgtttattctgtatctatttatctaatttgtatatacatgtgtgtttgtatgttcttcttatTCTGTATATCCACTTACctaatttttacttttatatttatttgcatttaatttgtgataattctgtatgcatttatttatctaattcatatatttatttgtattgcattgatccatctgttgttgtttttttgtatgcaactatttatataatttatatacattatatatttgtatttatcaatttatattcttcctttaaagcaatttttttaaataaagcaatttaaactaa

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003146 heart jogging biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:1905330 regulation of morphogenesis of an epithelium biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096266

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051453 False 789 lncRNA 0.39 6 28801366 28904600
TCONS_00053041 False 825 lncRNA 0.27 3 28900226 28902843
TCONS_00051461 True 1193 lncRNA 0.33 6 28900226 28905492

Neighbor

gene id symbol gene type direction distance location
XLOC_026399 NA coding downstream 44746 28752313 ~ 28756620 (-)
XLOC_026398 gsg1l coding downstream 50871 28718817 ~ 28750495 (-)
XLOC_026397 NA coding downstream 102510 28695762 ~ 28698856 (-)
XLOC_026396 fbxl16 coding downstream 136075 28634467 ~ 28665291 (-)
XLOC_026394 NA coding downstream 298873 28444234 ~ 28502493 (-)
XLOC_026406 BX005369.2 coding upstream 346457 29251949 ~ 29252065 (-)
XLOC_026407 NA coding upstream 471121 29376613 ~ 29382605 (-)
XLOC_026408 cyth4a coding upstream 581808 29487300 ~ 29508959 (-)
XLOC_026409 BX571960.1 coding upstream 647149 29552641 ~ 29552762 (-)
XLOC_026410 NA coding upstream 717625 29623117 ~ 29625935 (-)
XLOC_026395 NA non-coding downstream 339015 28459334 ~ 28462351 (-)
XLOC_026391 NA non-coding downstream 874313 27916224 ~ 27927053 (-)
XLOC_026411 BX571960.2 non-coding upstream 749469 29654961 ~ 29671653 (-)

Expression


Co-expression Network