G743813


Basic Information

Item Value
gene id G743813
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72140331 ~ 72140976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU844402
ACACAGTAAACATACCTGTctttcctcgtctcccaccgtagtcacagtgaagccaagcgctacataggCTTCGTCATATTTCCTCGTCTTAGCTTTCGGGAGACTTACGTTTGTCTCaatatctccgtctctctccgcctttCTTTTCATCCCTGTTAAATATTTTTCCATGGTGTCTCTTAAGGGTTTGTTATCTGCACTTCATATCTCCTGCTCTGTGATGTGTGCTCTTGTTCGGTGCAACAAAAAAACTACTCCCTGCGGCAAAAAAAGCATGTTCCCCGGGGTCACACGCGCCCCTCCTGGCATCGCTCCGAGCCCCCCCAGGGGGGCGCGCCCCACTATTTGAGAAGGTCTAAAGTAAGCAAAGAGAATCATTAACCTATGTTTGAGCCAACTCAACTATAACTCTGTGGCGATCAAATAAGACAGCGAGAGCCCCTCCAGGTTTTCCGTATCTGGAATTGTCTGCTAAGTGGTAATAAACTGTGGTGAGACTTCAGGAGATAATGCAGATATATTGTGTGTCATGTATGTGCGCTAGTAAGTTGGAATGAACTTTTGAACCTGCTTTGTTCTGGTCGAGAGGAGGAGATACCTTTTATAACCTATGATGTCATATGTGAAATATAAGCTGTTGTACATG
>TU844400
AAAAAACTACTCCCTGCGGCAAAAAAAGCATGTTCCCCGGGGTCACACGCGCCCCTCCTGGCATCGCTCCGAGCCCCCCCAGGGGGGCGCGCCCCACTATTTGAGAAGGTCTAAAGTAAGCAAAGAGAATCATTAACCTATGTTTGAGCCAACTCAACTATAACTCTGTGGCGATCAAATAAGACAGCGAGAGCCCCTCCAGGTTTTCCGTATCTGGAATTGTCTGCTAAGTGGTAATAAACTGTGGTGAGACTTCAGGAGATAATGCAGATATATTGTGTGTCATGTATGTGCGCTAGTAAGTTGGAATGAACTTTTGAACCTGCTTTGTTCTGGTCGAGAGGAGGAGATACCTTTTATAACCTATGATGTCATATGTGAAATATAAGCTGTTGTACATG
>TU844403
TATAACTCTGTGGCGATCAAATAAGACAGCGAGAGCCCCTCCAGGTTTTCCGTATCTGGAATTGTCTGCTAAGTGGTAATAAACTGTGGTGAGACTTCAGGAGATAATGCAGATATATTGTGTGTCATGTATGTGCGCTAGTAAGTTGGAATGAACTTTTGAACCTGCTTTGTTCTGGTCGAGAGGAGGAGATACCTTTTATAACCTATGATGTCATATGTGAAATATAAGCTGTTGTACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU844402 False 646 lncRNA 0.46 1 72140331 72140976
TU844400 False 401 lncRNA 0.46 1 72140576 72140976
TU844403 True 243 lncRNA 0.40 1 72140734 72140976

Neighbor

gene id symbol gene type direction distance location
LOC110530489 iba57 coding upstream 37811 72097392 ~ 72103866 (+)
wnt9a wnt9a coding upstream 206470 71907559 ~ 71934937 (+)
c8h1orf35 cssa14h1orf35 coding upstream 307775 71828037 ~ 71832556 (+)
LOC110530483 obscn coding upstream 322210 71727788 ~ 71818121 (+)
atg9b LOC106569346 coding upstream 458033 71659108 ~ 71682417 (+)
LOC110530494 LOC106569334 coding downstream 5377 72146353 ~ 72155430 (+)
LOC110529137 LOC106569331 coding downstream 50191 72191167 ~ 72219447 (+)
LOC110530496 LOC100136504 coding downstream 200520 72341496 ~ 72345654 (+)
LOC110530498 LOC106569327 coding downstream 353069 72494045 ~ 72496970 (+)
LOC118965654 NA coding downstream 360333 72501309 ~ 72501364 (+)
G743791 NA non-coding upstream 847 72138979 ~ 72139484 (+)
G743787 NA non-coding upstream 59196 72080737 ~ 72081135 (+)
G743779 NA non-coding upstream 60538 72069953 ~ 72079793 (+)
G743745 NA non-coding upstream 63468 72030412 ~ 72076863 (+)
G743815 NA non-coding downstream 2607 72143583 ~ 72143878 (+)
G743818 NA non-coding downstream 5899 72146875 ~ 72147090 (+)
G743843 NA non-coding downstream 45788 72186764 ~ 72187047 (+)
G743852 NA non-coding downstream 60109 72201085 ~ 72201301 (+)
G742860 NA other upstream 424715 71695602 ~ 71715616 (+)
G742095 NA other upstream 1513587 70626221 ~ 70626744 (+)
G740827 ripk1 other upstream 2602055 69536400 ~ 69538276 (+)
G739708 NA other upstream 3135215 69004337 ~ 69005116 (+)
G739670 NA other upstream 3233366 68903365 ~ 68906965 (+)
LOC110530976 LOC106569323 other downstream 401750 72542055 ~ 72555556 (+)
LOC110530502 LOC106569321 other downstream 493908 72634238 ~ 72714065 (+)
LOC110530507 LOC106569317 other downstream 719432 72779485 ~ 72872336 (+)
G744696 NA other downstream 721280 72862256 ~ 72864703 (+)
G744697 NA other downstream 726125 72867101 ~ 72868382 (+)

Expression


Co-expression Network