XLOC_026407


Basic Information

Item Value
gene id XLOC_026407
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29376613 ~ 29382605 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053042
GATGGTTTAGGTGTGGAGAAACAACACTTTTCACTTGCGTTTCTGCTTCAGAGCCTTCAGATTGACCATGCAAGCATGCCGAAGCCCTGTCAGAAGCTCTTCTGTCTCTTGCCACCCATCTTTAGTCTCTCAAGAGTCATGCTACATGGAGTTTATAGCTTCTTTAACAGGGGCAAATCAATAAAGAGTTCTGCGCTGATTATCAACACGCAAAGTCAAGAggatggttcactcaaaaattaaaagtTTGCTTCATTCCCTTTTTCAAAACCTTAATGAAAAAAAAGGGGATTTTTTAAGAAAGTTGTAATCAGGTAAGCATTAACTTccaatagtgtttgtttttccttctatggaagttaatagttacaggtttttagctttcttccaAAAAATCTCAACAATAGTGAGTACAGTTCACTACATTTTTATCCCACCTACTGCTGCCCCTGTCAATTTTCACTGCTTAAGCCAATCCTGCCTCTGCTTCATCCTGCTTGGTTCCTGCTTTACAACTCAGTACCAATTTCAACCAATCCCCTCATACCAGCTCTCCTTTAAAAACTCTTCATTCTTCCAGCATTTGTGTTGGTGATTTTGCTTGGCGTTTTGATATTACTGTTTGGTTAGTTTGTTGATATTGTTTGTCCTTATTTAATTTCCACCGTGTTgttgtttcacttttttttttttcctacccTTGTGTTACCTACCCTCGTGTTTGTCATTGAGGTTATAAAGATTGGTAGGGAAGTCCTGTGACATACATCTCAACACATAGATTTACAACTATCTAGAGATCACTAGGCGAGAAGATGTGTGCCAACCCTAGCATTTTTGGTTAAGCTATAGTGTAGATTAAGTAGGACATAATTAAAGTTAAAGATTTCTTTTTCATATCTTTTGTTTGCAAGATTAAACTAGAGGGGATTTTTGAATATTAGTAAGGCTACGTAGCCAGTCTTTTTAAATTACAATGTTTATTGTTTCTAAAATTGTAAAAGAAACACTCATTGATTTACCATCACTACTTGTAAACAAATGACTATTGCTTGTACCCTAGTTATTGTTGTCTGTCCTTACTTTGAAGTACAATTTTATTTTGAGTGTCTGTTTTAACCAAGTCCTTAATCCAAGTGTGCAATCTCACTCCAGTAGACTGCCCTGAGGTTGTAACAGTGAACTATACCCTTTAAATGTgtataattctgtcatcattcagaAAACTAAACATCTGGAAAGTCATTGGAGTACAACAGAGCTCACCCATTATTTTAGCAATGCTGCATGATGGTTTCAATAAAACGCTCTCCTGTTAACAACTCTATAGCACACAATATGTCAAAGATTTATTATATTGTGAATGTTAGGGATCAAGGAGGTCAACCAATATGATTGGTTGGGCTTTACAAAATCTGATTGTCAACTTTAAGGCCAAAATAAAGTTTATAAGCAActagtaataaaagaaaaaacaagcagCTCAAATGTGATTGATGCACAAGAAACCATGAGATCTGTTTGCATGCAAATTTGAACAAATGGTCCTTGATTCGTATTGAATAATTTGTGTTGTATTGGGGCAGGGTGTAAACTTTGAACatccttaattaaaataaatttcccATATAGATAAAATGAATGtgattactattggaatgtaacTGCTGCACtgtccaataataataaaatggtttcctagaagaaagaaaataataaaggtGTTTTGGAAggactatctctttaaaaaaatcaagcaacaattcaaaaaaggtttaaaaatttTCCATAAAATACTTGCAGAAATCTCAATCATTAATTCTGACTGTCATTCAACATACTATACACACCAGAATGGGGGAATATGAGTGAAACAGAGCGACTGCAATTTTGCCTCCCTGCTAAAAGCTTTCCATAATTGAACTTTTTTCAGCATTTTCTGCTCAACCAGTGGGAGAAACTCAGCTTCTATCCTcatgatttaaaaagaaaatccatCTACCACATCACAATCACACAAAGTGAAAAGTCCAGCAGGACTATTAGAATTCAACAAAGCCAATCAGATTTGTGGACCAGAGTGAACAAACCGATAAGAGATCCAAGCCAGCAAAAAGCACAGTTTGATCCCAAACATCATCTAGTGTCATCAATAAAACTAGAATATAGATTCAGGAAGACATCAGGGTGGGCAGGGGGAAACAAAACCTAAACCTCAACCACTCTAAAATGCATGTATCATTGTCATTGGTCATAGCACACATGCAATTGGATATATAAAAGTATATGTACATATGTTCAACCCAGTGACAAGACACATCGAGTATAAAATCTCACCCATCACTCTAAGCCATTTAACATCACACGCACGTACGTACAGTACACATTTCATCAACTTAATATATGCATACGTCCTTAAATGCATTGTCaggtttgtgtttctttttttctttaagctACATAAACTTTCAAGCTATACAGCGATGGCTATGAATTAGCTTTCGGTTTACCTGTTACTCTAATAAAACTGGCCATCGCTCATTCTGCTATAACGGTAATGCACTGACGCAGGCTTATTAGAGCATTAAATGCAAAgtcaaatcaaatgaacattaacATTTAACATACAGTCCTCCTCTTTTTTCCAGCCATCTGTCTCCCTGAGGAAACAGAGCGCTCAGTAGTGGTATTTTCCAAGGCCCTGAGTTCGAAATGACTTCATTTGTTCATCTGAACCTTTGGCAGCCCATCTAATCGCCGGTTATGTAATGTGATAAGCCCTCACATCGTGCAGATATTGTTATTTAGGCTAGTAAACAAGGGTACAtactcttctttaaaaaaaaagaagaaaagaaagacgTTGACATCATTAAGTGTATTTGGGGCACACAAAGCTACTGTTTATTGCTGTAGTGTCAGACTAACCTTTAAAGTCTTGCGCActattagcaaataaataaataaaatgcgtCTTGTGAGATCCAAGAACACCTTGGAAACCAAGTAAGCCCTTTGTTATTGTGTTTTGCTGATTAAACTTTAATACTTCAGTTCCTCGTTTAAAACTCCATGACTGAAACAGGCAAGATCAAAATGACAATCCCGCAACTTGGGTCCCGACTAAACCACAACACAACCGATGTAACGAAAAGAGACCCCGACGTCGTGGATGGACTACCAACAAAGTGACAACGAAGTTCATCAACAGGTCAAGTCTAGTTGAGATTTTCACCTGAATATTATCAAAGAAAACACACCAGGGGTGCTAAACACTACAGCAGACTAAACTAAGGAGATATTCGGAGTGTCATACCTACAGTTGCTCCATTTGCACATGAATACAGTGACCAAGTCTACGCTAGATGAACTCAAGAgtgcaatttctttttttttgttttgttttctcagagGAGGAATAATAAATAAGAGGTGTCCTACTGCAATCCGGTAAACATGCTAAAGAAAATCCATGTAGAAATCATCGACTCCAAATCCAATCAACCCTTGTCAAAATGAAAGCTAAATGTCACCGTCTTGTGTTGTCCTCATCTGACATGCCATTCAAGGACCGAAATAAAAGCTCCTGGGTTCTTGAAGAAGCGTTTAAATCCCATGGCCTGTTCATCATCCTTTATGTCCGGCTGTATACATCCGTTAGTTCATGTAATCcacgatcttttttttttttttttttttttcatccgaGCATACAAAAAGAATCCCCTCCACCTAACCAAAATTAGAAAAATGGAAGCCACTTGCAGGGAATAAAGTCATCACGTAGAGAAATGTTTTTGGGTTGTGGGGAGGACAAAAGTGAGCACACCAACGCGTGCCACCCATTCCTTTGATCCAGAGCATATCGATAAAAAAATATCTCAGTAAAAACCCCTTTCGTCCAGCATTGACATCTTCAGCAATTGTTAGATTAAACGTTTTTGTAAAGAGACTCCGTCATGCAGAGGACTGTCCTTGTGTCCATATTTTCTTCATCTCCTAATGCAAAAGGTAGGAGATTACATGTTTCTAACGTTTGCCCTTTTtatgaaatatataaacaataattcCAAGAAACTAGagcaaatcaataaaataaataaataaataaacaaacaaataaataaataaataaaaacctaaatatatcaataaataaatacatttacagacacacagacaggaaaacaaatgaattatCTGTAGATAATCCAaaggatagatggacagacagacttgcttttattcattttggtccctctctaaaacGAAAGCTTTGTTTCAGGctgaagattgaaaaaaaaaaattctctcctcAACTACCtagaaacacacagacacaaactaaGTAAGAAATAAACATAACCTATACAAATAGTGTGTATGCACAAAGAGTTACCAATCCCAAATCCTTTTTGCGatgtaaattattaaatcatgAAACACAGCATGCCCTCTCTATTAAAGTAGAAATCGATGTTACCTTATGCCTTCAATCCATCTAGATATACTTTTGTATGTATATTCCCTCCAAAATAACTGTCAGGAAAGCTTTCCCTTTACTTTACGTGTTCTCCTGACCTGATCCTCCAGGCAGCTGTTTGATCAGTCCCGTCCTGTCTAGTCATGCACTGATGGGCCAAACAGCTTCCGTCAAGCCTCGCCATCCAGTTTCTCTACAGTCCTGTTGGACGTTTTCCACCAGCAAATACAAAATGCTAACGGGTCACAAATGAAAACGGAGATAGAGAGAAACAGACTTTGAGATGGAATACCACATGTCAAACTGCTCcctgaaaaattaaaaacagatttgAGTAGTGGGCATTAGAAAGAACTAACACTAGGTAGAGTTTCATCTATTTTTCCTAGAGCCCGCAATTGTTATTTGGCTTGTACTTTCCCCATCTGTTCCTTGTGCTGCCTCCGACTGCCTCTCCTTCCTCTCTTTCCAGGGGCTGGTGATATTACCCTGTGGCTCTTTCGTGAACACTTTTTCTTGGGCTGTGAGAGTCCCCTGGTCTAAGCTGCCCGTGCTGTTGCACTTTTTCACAGACAGGGGCACTAGAGAGCTTGGTAGAAGTAGCGAAGTGAGCGACAGGCTGCTCTGCGTCTCTGAGAGCTGCTGGCTGTCGCATGTCTGCTCGGAGCTGCACCATACCAATCCTACATCCGCCTCGGAACCTTGTCGAATGCTGCCCGTATTGATGTCCGTTTCACAGCTGCTCCTGCTGCGCTGGTGCCCCCTAGTGGTTTGGAGGATGTGTGTGGCTGGAGGACTGGGTCTCAGGGTCTCTGTGGAGAGGCTAGTACGCTCGTCGAGGAGTGTGTCCAGAAGGGGCTGGGGCGTTGATACGATGAAACTGAGCCCTTCTTCCATGGTGGTCGGTAGGCTGCCCTCTGAGCTGCCCGTAGCCAGAGAGGAGTCACTGTGAGATGGGTACTGCGGGCAGAGAGGTGGAGTTTTTGACAGGTGCAGAAAAAGAGGGGGGGAAACTGACGATGAGAAGAAACAAGCACAAGATCATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053042 True 5530 lncRNA 0.39 2 29376613 29382605

Neighbor

gene id symbol gene type direction distance location
XLOC_026406 BX005369.2 coding downstream 124548 29251949 ~ 29252065 (-)
XLOC_026405 BX510989.2 coding downstream 466665 28899595 ~ 28909948 (-)
XLOC_026404 eef2kmt coding downstream 503857 28869610 ~ 28872756 (-)
XLOC_026403 BX510989.3 coding downstream 517213 28859284 ~ 28859400 (-)
XLOC_026402 C3H16orf89 coding downstream 519418 28851175 ~ 28857195 (-)
XLOC_026408 cyth4a coding upstream 104695 29487300 ~ 29508959 (-)
XLOC_026409 BX571960.1 coding upstream 170036 29552641 ~ 29552762 (-)
XLOC_026410 NA coding upstream 240512 29623117 ~ 29625935 (-)
XLOC_026411 BX571960.2 coding upstream 272356 29654961 ~ 29671653 (-)
XLOC_026412 si:ch73-233k15.2 coding upstream 291703 29674308 ~ 29688399 (-)
XLOC_026400 BX510989.1 non-coding downstream 471121 28801366 ~ 28905492 (-)
XLOC_026399 NA non-coding downstream 619993 28752313 ~ 28756620 (-)
XLOC_026413 BX901883.4 non-coding upstream 330606 29713211 ~ 29717145 (-)
XLOC_026414 BX901883.6 non-coding upstream 387537 29770142 ~ 29770258 (-)

Expression


Co-expression Network