G744846


Basic Information

Item Value
gene id G744846
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72984291 ~ 72987041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU845510
cccaaaatcagAGAAATCTATAGTGGTGCATCTTTTCCACAACACCACTAGGAGGTTCTACTGCACATTACATTTCATCTGTCAAGACCGAGTTGCAATGCAGCCCACACAATAAAATAGTTAAAAATTAAGATTTTCATTCAAGACTGGATATTACAACATTGTGCATCTCCTTTCCAGCACCAATGCACAACATTGTCAAAAAGCATGTCTGTCACAAACATTTAGAGACACTAGTTGCCCTATAATAACCATTACATTAATATCTAGGCTCAGCCTTACATTCTGAAGTACTACAGACAACTGGACACTAACCTTAACTGTAAGCAAAAACATCACTTCAAAACAGGGAGTCAACCCAAGCTCACTACAATGTCAAAAAACAAAGAATAACTACTGTACTCCTTGGCCTAGAAAACCTCAGTACTTAGACTGACCTCTGGGCCCGTATtcactgatctagaatcagttctGCTTTTTCGATCATAATTAAATAGACAAGGGGACCCTGATCcgagatcagcactcttactctgagtCGCTTTGTGAATACGGACCCCTGGCTATAGGAATACAGTGTCACACAATATTGTTATTATAACATGAATAAAATGACCTCAATCCAACTGGTAAAGTGTTCAGTAACTGtggaaccatagaaatataattacagAATTATAGTTAGTGTGGATTACCAACACATCCAAGGTACATTTTTTCTTTAAATATTTtttcattattagttacattaCAGTGTAAATCGGTACAGTATACATCAATGATTCATCATATCAAATAGCTATCCTCAGAGAAGTCAACCTTTGCATATATCACTCTCTTTACACATAGTACTTAGCTAATCCCAATACAAAAAAACACTGGCTGGTTTCACAACTATTGATCCCCAAAAGAAACTAAAGGGTAGCATCGGTTTTATTATCCAAACTAGAAGGTTGTGGGAGTTGAAGTTTCTCCTAATGTCACACTGCGTTGAGAGAGAAAACAGTATACATCATCGTATTGCTGTTGATTTAGGGGGGTATTCTAGGTTACTGAAATGAGTTGTGTTCATTTGGCACCAAACAGAAAAAAGGGAcaaaaacagggagggactacctggtcCACAAAGCGTCTTCAGAGTAGGAATAGTGAATATTttgacactgctgctactcgctgtttattatctatgcagtcactttaaccctcctacatgtacaaattacctcgactaacctgtacattgactcggtagCGGTACCCCCTCAGTATTGTTATTTTAGTGTGTTTTTACTttaatttatttagtaaatattttcttaacactgcattgttggtgaagggcttgtaagtaagtgtttcatggtaaggtctactacacctgttgtattcggagcatgtgactaataacatttgatgatTTTGATCTAGGACCAGCTCCCACCTGTCAACGTAATcctattcattgtgatctaaaaggctaaactgatcctaaatcagtactgctactctgagatgctttgtgaatacaggccctggactTCAGTTGCAAAACATTTGCCACTGTGTGCACTATTGCATAACACCCAGAATTGCCCTTGAGAATTAAATTGGTGAAAAGAAGCATTTGAGAAGGCCTCTGACAGACACCCCACACTGTTATTCCTGAGTTGCATCCCTGCGATATGCTGCGTAGTGAATGGTTGATGAGTGTGTCAATAATCATAGAAACAGCTGCTCCTGTCACACTGAGTCACCCCACACAGTCTCTCCCAGACCAGACAGACTGGTTAGTTGGTTCATACCATTGTCCTGTCTCTAGAAGTTGAGGAGCACAGGGAGGAAGATGAGTCCGTGCGTGGCCCCCAGCAGCACCATGGCCAGGTACATGCGGAAGTAGAAGATCTGGAAGATCTGGGACTTGGACAGAGCCAGGATCAGGATGCCTCCAAACTTAGTCAAAGTGATGCCACTGAACACCTGGGAGAAGAGGAGCCATGGTTTAGTTATATTCTGCTGGTCAGCATTCCCTCCAGTCAATAATGAGTAAAATAACCAGTGTCTAAAAACCTGAGTAAAACAAGGAAGTCATTTCTACTTTTCTAGATATTCCATTCATGCCAAGAATTCAATTTTACTCCACAGTTCAGTTTGCAATACTATTTTTGCATGTCAGATATACTGCTATTTCAGAATTATTGGGCAAAGGATGAACTAAATgcttttcttaaaaaaaatattcagacAGTGTGACATTTCTATGGACAGAATACAGCGTTCCAGTCTGTGGTGAACTACAAAAGTAGAGCTGAGGTCTATTCATTAGTCCTattccgttgcaaaacattttgtctGGTGCAAACTGTCTTGCAACCTAAACACTTTACCGTTTACTCCAGATACCAcacggaagcaaac

Function

NR:

description
Npc1 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU845510 True 2418 lncRNA 0.40 2 72984291 72987041

Neighbor

gene id symbol gene type direction distance location
LOC110530509 cables1 coding upstream 8300 72951202 ~ 72975991 (+)
LOC110530508 LOC106569316 coding upstream 74679 72901218 ~ 72909612 (+)
LOC110530507 LOC106569317 coding upstream 111955 72779485 ~ 72872336 (+)
LOC110530502 LOC106569321 coding upstream 270226 72634238 ~ 72714065 (+)
LOC110530976 LOC106569323 coding upstream 429006 72542055 ~ 72555556 (+)
mmp16b LOC106569311 coding downstream 133788 73120829 ~ 73162119 (+)
LOC110530978 NA coding downstream 195129 73182170 ~ 73187819 (+)
samd13 LOC106569309 coding downstream 237130 73224171 ~ 73227167 (+)
LOC110530979 LOC106569355 coding downstream 300210 73287251 ~ 73290541 (+)
LOC110530519 NA coding downstream 326950 73313991 ~ 73320557 (+)
G744800 NA non-coding upstream 5168 72977456 ~ 72979123 (+)
G744801 NA non-coding upstream 19679 72964322 ~ 72964612 (+)
G744839 NA non-coding upstream 31406 72952677 ~ 72952885 (+)
G744829 NA non-coding upstream 55854 72928082 ~ 72928437 (+)
G744849 NA non-coding downstream 6477 72993518 ~ 72993937 (+)
G744883 NA non-coding downstream 76922 73063963 ~ 73104651 (+)
G745028 NA non-coding downstream 144027 73131068 ~ 73131355 (+)
G745029 NA non-coding downstream 145140 73132181 ~ 73132390 (+)
G744697 NA other upstream 115909 72867101 ~ 72868382 (+)
G744696 NA other upstream 119588 72862256 ~ 72864703 (+)
G745083 NA other downstream 262383 73249424 ~ 73250496 (+)
G745410 LOC106569417 other downstream 606596 73593637 ~ 73595238 (+)
G745489 NA other downstream 732675 73719716 ~ 73720650 (+)
G746052 NA other downstream 1965644 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 2027603 75014644 ~ 75033896 (+)

Expression


Co-expression Network