XLOC_026412 (si:ch73-233k15.2)


Basic Information

Item Value
gene id XLOC_026412
gene name si:ch73-233k15.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29674308 ~ 29688399 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051469
TTTTTCGTGAGAGAAGCAAGTTGGGATTTGATTGACGCAGAATTCTTGGTTACAGGCGGAGCAACTGAAATGGAGAAAAGAAACCGAAACCTAAGTCTCCTCCATTATAAACAAAAGATTTACCTGTAGTTTTCTTTACTCAGTCTAGCAGGTTTACATCGGCATAGCAGGCTGTACGATGGACAGCAGAGAAGAACTACAGCATCTCCTCTCCGAGTATGTCGAAAACACTCTAAACTACATCCAGACAGTGAGAGACTTCTGCGACAAGCAACCAAAATGGACCCTtcagagagagacagagctgGAGAACATGAGAGACATCAAGGACCAAGCAGACCAAGTCAGTCTGAAGTTTGACCACGTTCAGCGCTCCGAGAACAAGTTCAAGGCTTTCGGGGAATTCCTGTGGAGTGGTTTAACTCAGGTCACAGCTGAGTCCAGATATCAGGAGCTGGAGAAGAATCTGGGTGCCGTCCTGAAGGACACCCTCGAGGGGCTAGAGAAACTTGACCACTTTCTGGATGCAGTGGAGAAGCTTAGAGTCACATCGCTGTTTGTGTTCACCGGACGAAGCTTCTTGCCAAAAGGAGTGAGTCCAGAGAGTGTGCGATCGGTCATCACAGCTGCCAGGATGGCTTCTCCTCTTCTAATTCACTTCAAACGAAATGCAGAAACCTTTTTCCTTCCTTCACTCAGTAATCTGGATGTCCTGACCTTTCAGCTGGACAAATACATACGAATCACAGAACAGATTTGTGAGAGGATTGAGAAAAAATCCAAGAGTTTTTTGTGGTTTGAAGATGTCTATAGTTGTAAAACGGGTGAACCTCTAGTGAAGTTCAGTTTGAACTTAAGTGAGGACTCCATGCAAAACATGCTCGATCATTTGAAGCAGTTGTGCAAAATAAGGATGGATCAGAACATCAGGCTGACCTTCATTTTTCAGGAACATGCTCAGCGCTTCATTGGTATATTCAGTCAGCGTTGCTCTAGAATGGAGCAGTTCCTGACAGATCTGGAGGAGAGCGCAGTTCAGCTGGACAGGATGAAGATGGGCGCCAGTATCTCCACTGTGGCTGGCAGTTCAGTAGGGGTGGCTGGAGGTGTTTTGTCCATCGTTGGTCTTGCTCTTGCCCCTGTAACAGCAGGGGTGTCATTGGCTCTTACACTGACAGGTGTTGGTCTTGGCGTGACCAGTGGTGTCAATGGTATAGTAACAGGCATCACTGAAGCAGCAGTCAACAACCATCATGGGAAAAATGCACAGAACATTTTTCAGAGATACATGGAGGATGTTGGGAAGATACTAGACTGTCTGGAGGTGGCCAGTAGTGAGGAGCGTTTGGAAGCTGTAGCAGCAATTGATACTGTAGATGTGTCTGCAGCAGGAAGGCTGATTGTGCGTGTTGGAGGAGTAGCCACATGTATTGATGCTATAGTAGATGGAGCTTCAGCTGTAACAGTGCTCAGAAGTGAAGAAGTGATTGCGACCGCAGCTAAGATCGGGCTACAGGAAGCACAGAGCGCTCGCAGCATTCCCAAACTAGCTGCAGATCTCCCTGACATTGGACAGCTGGCAAAGGGGACCCCCCTAgcacttacaaagtctgctaGAGCTGGATTTATCACTCTAAATGCCCTCTTTATTGGCCTAGATGCCATTTTTATTTGCAAAGAGAGCATAAGTCTGGCTAAGGGCAGTAAGAGTGATGCCTCTCAGCTCATCCGCTCCAGAGCAACTGTGTGGAAATCTGAGCTGGAGGCCTGGCAGAAGATCCATGATTCCTTATGCATTGGAATATGGAGATTTAGGAAGAGCCAGGAAGTGTTAGAGCAACTGTTTTTGCCATAAAATACTAAAACACTCAACAAGAGTTAGAATTAGCATCAAGCTTTTGCACTGAACGAGCAACTATTTAGAACTGCAATTAGACCTGCTCTTATAGAACGCTAGTCAGTTTAACTGCACAACACTTTCAGACTTGTTCGATATAACAATTTATGtctgtaaaataaaagcaataagaAATATTCATGCACTAGCAATAAATGTTTTAAGAGTTAAAAATCAATGTACTGTGGATATACTGTAAGCTTAAAGCTGTTTATTCTGTgtatatgttttacattgtaaagtCAGCTGGAGTTTTGAATAAATGCAAATAACAGTGA
>TCONS_00051470
CTCTCCGAGTATGTCGAAAACACTCTAAACTACATCCAGACAGTGAGAGACTTCTGCGACAAGCAACCAAAATGGACCCTtcagagagagacagagctgGAGAACATGAGAGACATCAAGGACCAAGCAGACCAAGTCAGTCTGAAGTTTGACCACGTTCAGCGCTCCGAGAACAAGTTCAAGGCTTTCGGGGAATTCCTGTGGAGTGGTTTAACTCAGGTCACAGCTGAGTCCAGATATCAGGAGCTGGAGAAGAATCTGGGTGCCGTCCTGAAGGACACCCTCGAGGGGCTAGAGAAACTTGACCACTTTCTGGATGCAGTGGAGAAGCTTAGAGTCACATCGCTGTTTGTGTTCACCGGACGAAGCTTCTTGCCAAAAGGAGTGAGTCCAGAGAGTGTGCGATCGGTCATCACAGCTGCCAGGATGGCTTCTCCTCTTCTAATTCACTTCAAACGAAATGCAGAAACCTTTTTCCTTCCTTCACTCAGTAATCTGGATGTCCTGACCTTTCAGCTGGACAAATACATACGAATCACAGAACAGATTTGTGAGAGGATTGAGAAAAAGTTAGTACTTGAATtcatttgttttacttatttgaTTGACACAGGTTTGAACTTAAGTGAGGACTCCATGCAAAACATGCTCGATCATTTGAAGCAGTTGTGCAAAATAAGGATGGATCAGAACATCAGGCTGACCTTCATTTTTCAGGAACATGCTCAGCGCTTCATTGGTATATTCAGTCAGCGTTGCTCTAGAATGGAGCAGTTCCTGACAGATCTGGAGGAGAGCGCAGTTCAGCTGGACAGGATGAAGATGGGCGCCAGTATCTCCACTGTGGCTGGCAGTTCAGTAGGGGTGGCTGGAGGTGTTTTGTCCATCGTTGGTCTTGCTCTTGCCCCTGTAACAGCAGGGGTGTCATTGGCTCTTACACTGACAGGTGTTGGTCTTGGCGTGACCAGTGGTGTCAATGGTATAGTAACAGGCATCACTGAAGCAGCAGTCAACAACCATCATGGGAAAAATGCACAGAACATTTTTCAGAGATACATGGAGGATGTTGGGAAGATACTAGACTGTCTGGAGGTGGCCAGTAGTGAGGAGCGTTTGGAAGCTGTAGCAGCAATTGATACTGTAGATGTGTCTGCAGCAGGAAGGCTGATTGTGCGTGTTGGAGGAGTAGCCACATGTATTGATGCTATAGTAGATGGAGCTTCAGCTGTAACAGTGCTCAGAAGTGAAGAAGTGATTGCGACCGCAGCTAAGATCGGGCTACAGGAAGCACAGAGCGCTCGCAGCATTCCCAAACTAGCTGCAGATCTCCCTGACATTGGACAGCTGGCAAAGGGGACCCCCCTAgcacttacaaagtctgctaGAGCTGGATTTATCACTCTAAATGCCCTCTTTATTGGCCTAGATGCCATTTTTATTTGCAAAGAGAGCATAAGTCTGGCTAAGGGCAGTAAGAGTGATGCCTCTCAGCTCATCCGCTCCAGAGCAACTGTGTGGAAATCTGAGCTGGAGGCCTGGCAGAAGATCCATGATTCCTTATGCATTGGAATATGGAGATTTAGGAAGAGCCAGGAAGTGTTAGAGCAACTGTTTTTGCCATAA
>TCONS_00051471
GATTGACGCAGAATTCTTGGTTACAGGCGGAGCAACTGAAATGGAGAAAAGAAACCGAAACCTAAGTCTCCTCCATTATAAACAAAAGATTTACCTGTAGTTTTCTTTACTCAGTCTAGCAGGTTTACATCGGCATAGCAGGCTGTACGATGGACAGCAGATTGTACGCAAGCAAAAGATGGCCAGATTGAGACTTGTGAACTTCACCACTGGCTCCCTCCTTTAAAATGTTACTCTGCTGAAGTAcatgtgaataaaaaaatattttcaagacaGCAAATAACAGTGTCATGAAATGAGTTCGGCTCATGTGGACGAAAAGAGTCCAAAATGAGAATCTATGCATTTGGGGATTTACAATGCTATTATTCActttggaatgttttttttttttacttgcatgtatttgcacaatatttttatacataattgCCACATATTACATAGTAATGTAATAAGTTGTACTTTCATTACATATTAAGTGAGATTCTTGCCAATGTTTGTTTCATGTCCCATGTGTCAATATAGAGCTGCACTAGGAAGACCAGCAGACCTTTTGTAATTTGTGTTTGTAATCAATGTAATTGCATGATAAAATGATGAAATGGGAGATGTAATGGATTTATTCTTAAATTATCATTGTGTATGaagtgtgctttttaaataaacttgttttgAAATGCaagaaaaatactataaaaata
>TCONS_00051472
caacaacaacagcaacacagAAAGCAGAAAAACTAgatagaagtaaagttggttttatattcgcacattccgaCCTCTGCGTTCAATAAGTTTGTTAATCAGCAAGTAAAGAATCCAAATTCAATTATTTACCGTTGTAGTCGATTATGAGCAAAATGTACGCCACACTTTTCTGTCAAACTCAGCGTTTTAAAGGAGTAGAAAAACACGCTTACCTCTATGAAGGAGGTGACGTCATCGCTTTTTTGAGGGACCGTCTACAAACTATCAGTTTGTAAAATCAAGCTGCCAACGTTCACTGTCTATAATTGTACGCAAGCAAAAGATGGCCAGATTGAGACTTGTGAACTTCACCACTGGCTCCCTCCTTTAAAATGTTACTCTGCTGAAGTAcatgtgaataaaaaaatattttcaagacaGCAAATAACAGTGTCATGAAATGAGTTCGGCTCATGTGGACGAAAAGAGTCCAAAATGAGAATCTATGCATTTGGGGATTTACAATGCTATTATTCActttggaatgttttttttttttacttgcatgtatttgcacaatatttttatacataattgCCACATATTACATAGTAATGTAATAAGTTGTACTTTCATTACATATTAAGTGAGATTCTTGCCAATGTTTGTTTCATGTCCCATGTGTCAATATAGAGCTGCACTAGGAAGACCAGCAGACCTTTTGTAATTTGTGTTTGTAATCAATGTAATTGCATGATAAAATGATGAAATGGGAGATGTAATGGATTTATTCTTAAAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000073718

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051469 False 2175 mRNA 0.45 5 29674308 29688399
TCONS_00051470 False 1623 mRNA 0.48 3 29674628 29679471
TCONS_00051471 False 704 mRNA 0.34 2 29686639 29688370
TCONS_00051472 True 781 processed_transcript 0.35 2 29686709 29687763

Neighbor

gene id symbol gene type direction distance location
XLOC_026411 BX571960.2 coding downstream 2655 29654961 ~ 29671653 (-)
XLOC_026410 NA coding downstream 48373 29623117 ~ 29625935 (-)
XLOC_026409 BX571960.1 coding downstream 121546 29552641 ~ 29552762 (-)
XLOC_026408 cyth4a coding downstream 165349 29487300 ~ 29508959 (-)
XLOC_026407 NA coding downstream 291703 29376613 ~ 29382605 (-)
XLOC_026413 BX901883.4 coding upstream 24812 29713211 ~ 29717145 (-)
XLOC_026414 BX901883.6 coding upstream 81743 29770142 ~ 29770258 (-)
XLOC_026415 NA coding upstream 146766 29835165 ~ 29863606 (-)
XLOC_026416 rpl3 coding upstream 178814 29867213 ~ 29871364 (-)
XLOC_026417 BX901883.1 coding upstream 179005 29867404 ~ 29867540 (-)
XLOC_026406 BX005369.2 non-coding downstream 422243 29251949 ~ 29252065 (-)
XLOC_026418 NA non-coding upstream 180236 29868635 ~ 29868732 (-)

Expression


Co-expression Network