G745645 (LOC106569384)


Basic Information

Item Value
gene id G745645
gene name LOC106569384
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74053099 ~ 74101878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU846397
CCACGTATTGAGACACTGGACTCTCTCCTATGTGAGTTCTCTGATGTGACTTCATACCAGAGCGCTGAGTGAAGCATTTCCCACACTGTGTGCACTTGTAGGGCTTCTCTCCGCTGTGGACCACAGCATGTCTGATCAGGTTGCACTGCTTGGTAAAACTCCTGCCACACTGTTCACAGGTGTAcggtttctctccggtgtgaCTCCGGAGGTGTACTTTGAGCTGGCAGAGACGCTGGAAACTCTTACCACAGAAGGTGCAGCTGAAACGCCTCTCGGTGTTTCCGCCTGATCTCCACTGAGTCCTCATTCTCTTCACCATGTTAAAACTACTGTGACTCAGGCTGTATCCAGAGAAGGTGGAGGTGGTGGCCATGTTTGACCCTGTCATGCACTCACTCAATCTCACTGTTGCTTCTGAAGCCCTGTATTGATGCAGTCTTGGCTGTAGAGCTAAACTATTTCCTTCATTACTTGAGTTCAGCATCTCACTGCTCTGTCCCTCTGGCATCTGTTGTCTAGTCTCATCAGCCATTGTCCTGATATGTCTTTTCATGTGTGCTGCTGCACTGAACATGTTagcatgtggtttccatataGAAGCGTGAAGCGATGGCCCCACTTCATCTGTCATAGTAGGAACAGATGGCAGCCCACTATGAGATGGGAAAATTGAGATATTCTGAGAGTACTCTTCTGTGGAATGAAAGGAGAAATCTGGGTGGCCATCAGGGTCAGTGTCTCTGCCTGGATTCACAGAGGTCCACAGCTGCCCATCAGTCTCATCCATAACAAACTGGTCAGGTCCTGCCAGGGCCGTGGTCGGATCTgactcctcctctttctcatccTTCACCAGCACTAGGTCTAGTGAGTCCTCGTCTGGCCGGTGCTGCTCTGTGTTGAACACCTCTGTAGATGATAGCCAGGGTGTGCCTGGTTCCTCTGGATGATCAGAATTGGGGTAATGTTCCACTGAGTCTCTGGGAGATATGCTGGGTTGTGTGATGAAGTCCTCATCACAGAGCTGTTGCTCAAAGGATGGTGGTTTCCCAGGCTTGGAACCAG
>TU846398
ACTGGACCCTCCCCTATGTGAGTTCTTTGATGTGACTTCATTTTGGAGCGCTGGGTGAAGCATTTCCCACACTGTGTGCACTCATACGGTTTCTCCCCGGTGTGGACCAGAGCATGTCTGATCAGGTTGCACTGCTTGGTAAAACTCCTGCCACACTGTTCACAGGTGTAcggtttctctccggtgtgaCTCCGGAGGTGTACTTTGAGCTGGCAGAGACGCTGGAAACTCTTACCACAGAAGGTGCAGCTGAAACGCCTCTCGGTGTTTCCGCCTGATCTCCACTGAGTCCTCATTCTCTTCACCATGTTAAAACTACTGTGACTCAGGCTGTATCCAGAGAAGGTGGAGGTGGTGGCCATGTTTGACCCTGTCGTGCACTCACTCAATCTCACTGTTGCTTCTGAAGCCCTGTATTGATGCTGCCTTGGCTGTAGAGCTAAACTATTTCCTTCATTACTTGAGTTCAGCATCTCACTGCTCTGTCCCTCTGGCATCTGTTGTCTAGTCTCATCAGCCGATGTCCTGACATGTCTTTTCATGTGTGCTGCTGCACTGAACATGTTAGCATGTGGTTTCACAATAGAATAGTGAAGTGATGGCCCGATATCATGAGATGGGAAAATTGAGATATTCTGAGAGTACTCTTCTGTGGAATGAAAGGAGAAATCTGGGTGGACATCAGGGTCAGTATCTCTGCCTGGATCAACAGACGTCCATAGATGCCCATCAGTGTCATCCATTACAAATTGGTCAGGTCCTGCCGGGACCGTGGTCTGATCCAGGTCCTCCTCTTTCTCATCCTTCACCATCACTAGCTCTAGTGAGTCCTTGCTCTTGGCTGGCCGGTGCTGCTCTGTACTGAACACCTCTGTAGATGCGAGCCGGGGTGTTCCTGGTTCCTCTGGACGATCAGAATTGGGGTAATGTTCCACTGAGTTTTCGGGAGATATGTTGGGTTGTGTGATGAAGTCTTCATCACAGTTCCATTGGTCAAAGGATGGTGGTTTCCC

Function

NR:

description
zinc finger and SCAN domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU846397 False 1068 lncRNA 0.50 2 74053099 74097615
TU846398 True 1013 lncRNA 0.50 2 74096562 74101878

Neighbor

gene id symbol gene type direction distance location
zte38 LOC106569397 coding upstream 63184 73982708 ~ 73991211 (+)
prdx1 nkef coding upstream 71920 73974656 ~ 73981179 (+)
LOC110530543 gpbl1 coding upstream 101892 73940094 ~ 73951207 (+)
LOC110530541 ipp coding upstream 121602 73924309 ~ 73931497 (+)
LOC110530540 LOC106569403 coding upstream 135101 73909778 ~ 73917998 (+)
LOC110530564 LOC106569383 coding downstream 126233 74228111 ~ 74230113 (+)
LOC110530563 LOC106569381 coding downstream 142523 74244401 ~ 74247287 (+)
LOC118965552 NA coding downstream 173448 74275326 ~ 74279768 (+)
si:dkeyp-66d1.7 LOC106569375 coding downstream 266259 74368137 ~ 74376776 (+)
ftr66 LOC106569374 coding downstream 274969 74376847 ~ 74382998 (+)
G745643 NA non-coding upstream 986 74051388 ~ 74052113 (+)
G745633 NA non-coding upstream 22845 74029883 ~ 74030254 (+)
G745623 NA non-coding upstream 36665 74015890 ~ 74016434 (+)
G745612 LOC106569395 non-coding upstream 47117 74005630 ~ 74005982 (+)
G745655 LOC106569384 non-coding downstream 3390 74105268 ~ 74115014 (+)
G745689 tep1 non-coding downstream 107611 74209489 ~ 74211050 (+)
G745737 tep1 non-coding downstream 116720 74218598 ~ 74219954 (+)
G745746 LOC106569380 non-coding downstream 146475 74248353 ~ 74249745 (+)
G745795 LOC106569378 non-coding downstream 201228 74303106 ~ 74308955 (+)
G745489 NA other upstream 332449 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 457861 73593637 ~ 73595238 (+)
G745083 NA other upstream 802603 73249424 ~ 73250496 (+)
G744697 NA other upstream 1184717 72867101 ~ 72868382 (+)
G744696 NA other upstream 1188396 72862256 ~ 72864703 (+)
G746052 NA other downstream 850807 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 912766 75014644 ~ 75033896 (+)
G746936 NA other downstream 1225894 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 1248330 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 1277624 75379450 ~ 75383243 (+)

Expression


Co-expression Network