G745795 (LOC106569378)


Basic Information

Item Value
gene id G745795
gene name LOC106569378
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74303106 ~ 74308955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU846569
CCGGCTGGCTACTAGGAAAATTCGAGCTTTGATGAACTTCCACTGCGATTTTGTCCATGTGGAATATTCTTTGGAAACGTAATCCCCCAGATCGAAAGCGGGGGACACTGCCTTGACCAGGCGTACTGCTGTGCGTACGCAGAAAGACTCCCTCTGGGTGCTGTTGGGTGGGACCACGCCCTGAACCCAGAGATAAGAGTACAAATATGTGCTCTCGTTTGGCAGCTCATCTGGCTTCTTGCACTGGCTCTGGGTGAGGTTGGTGGCTGTTCCCGTTAAATTAGCCAGGAGATATTGGACCAGATAGGTCAGTGCGTTAGCCTGATGGGACGACTTGGCAACACCAACGTAGTACTGGGGTGGGTTGGGCTGGAGGATGTCCTTCAGTTCTGGGGCCATCACTGCCTGAAACCAGCTGTTGTTGGATCTAACCAGAAACCCATACAGCATCTGGgtcacTGTTTTGGGGTCTGCATTGATTTTGTTTACTTGGGAGTTGTTTCCCCCAGCCTGCTTGAAGAGAGCGCGGGCAACTGCAGTAGCCACCTCGGTAAGAGACTTTGCAGTATCAGTCACAAACTCTAGCTGTTCCTCTGGACTCAAGTTAGATGGATAAGTCAGGTTCAGGTGGGCAGCATTGTCATAAAAACTCTCATAATACCTATTGTTGAAATCTGTTTGATGGTCTGCAAGAACAATCCCTGGAATTGCCCGAGCTCGGAGGAAACGCTGAAAGGAGGAGGGCGGGAGTGGTTGAGAAAAACCTGTCTCAACAAATGATAAGTTGAGACCAGCCGTGGAGGACTGTAAGTTTTTTACAAGATTCGTAACCTCGTCATGGACGGTGTTGTTCCTCCTGGACACAGGGTCTGAGTGAAGAAATAGGTTGGTGCCACTGCGCACTGCTACCTGTCCAATCTCCAGTATTGAGTGAACATTATCCAGGTCTATCACAAACATGTTATTCTTCATGTCATAAACCATTCGAGAGCTGCCAATGTAGTCAAATACTTCCCCGTGGAAGAAGGCAAAGAGGATATTCCGTGTGGGAGGGGCTTCCTGAGTGGCTTCACGTAGTGCCTGGGCAGCAGCCAGCAGAGTGACAAACCCTGAGACACTCCCCTCCGCTCCTGTAGAATCCTCCAAGAAAAATGCCCTGCTGTCCAGCCTGGCTGCTGCTATAACAACACTCTCGTTCTCCTTGTGACCAAAGGCGGTGCTGTTATAAGGCCGGATGAAAGTACACACATTATAACCACCAAGAGGGTCACACACCatcactgtgagagagagagagagagagagatgtctgtaAGATATACATGACAGTGTGTGTATTGACTACTCACGCATATACAATAATGCATCTTTGTATACCTGGGGAGGTGCTGAAGTCCATGCTGCTGCGTCTCATGCAGGTTGCAGTGTCAGTGACAGCATGCATATGAGAGAAGAGCTGCATGGCACACAGAGGGTACTGCAGGCCACTGCCGTTCACCACACGATTATGATCAAAGTAGCACTGTTTGATGACCTCTGTTTCATTGTCTTCTTTcagggagaagacagggaagTCAAATTCCTCATAGGACAGACCGTTCCCCCGAGGATTCCATACAGTCGTGTTACAGTGCGCTAAATTATGATCATAGGTTTCCGTGTAAACACCTGTGTTCTCATTGGGACATGTCGTATGTGGCGAGAACTCTGGTTGGCTAGTTTTTGGGACCACCACAACCCCTGCCACCCTGCTGGAGGCATTCTTCATCTTCATCATGATGGACttGGTGAAGAGGGATGACTCCAACAGGACCATATAAGGAGGATTGGGTCCTTTGCTCAAAGGCCATTCCAGATCTGCCTCAGACTCCAAGACATGGATCACCCCTGTATCACCTGATATCGAG
>TU846570
CCGGCTGGCTACTAGGAAAATTCGAGCTTTGATGAACTTCCACTGCGATTTTGTCCATGTGGAATATTCTTTGGAAACGTAATCCCCCAGATCGAAAGCGGGGGACACTGCCTTGACCAGGCGTACTGCTGTGCGTACGCAGAAAGACTCCCTCTGGGTGCTGTTGGGTGGGACCACGCCCTGAACCCAGAGATAAGAGTACAAATATGTGCTCTCGTTTGGCAGCTCATCTGGCTTCTTGCACTGGCTCTGGGTGAGGTTGGTGGCTGTTCCCGTTAAATTAGCCAGGAGATATTGGACCAGATAGGTCAGTGCGTTAGCCTGATGGGACGACTTGGCAACACCAACGTAGTACTGGGGTGGGTTGGGCTGGAGGATGTCCTTCAGTTCTGGGGCCATCACTGCCTGAAACCAGCTGTTGTTGGATCTAACCAGAAACCCATACAGCATCTGGgtcacTGTTTTGGGGTCTGCATTGATTTTGTTTACTTGGGAGTTGTTTCCCCCAGCCTGCTTGAAGAGAGCGCGGGCAACTGCAGTAGCCACCTCGGTAAGAGACTTTGCAGTATCAGTCACAAACTCTAGCTGTTCCTCTGGACTCAAGTTAGATGGATAAGTCAGGTTCAGGTGGGCAGCATTGTCATAAAAACTCTCATAATACCTGCGCATGGGTAAACAAAAatagctgaagttggagacttgtatctccctcactaactttaaacatcagctatctgtgcAGCTCACCGATCGcagcagctgtacacagcccatctgtaaatagcccatccaactacctacctcatccccatattgtttttatttacttttttgcacatcagtatttctacttgcacatcatcaactgcacatctgtcactccagtgttaattgctaaattgtaattacttcaccactatggcctatttattgccttacctccttactccatttgcacacactgtatatacagtggggcaaaaaggtatttagtcagccaccaattgtgcaagttctcccacttaaatagatgagagaggcctgtaaatttcatcac
>TU846571
gtcattttctggatttttttttctcattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctcatctttttaagtgggagaacttgcacaattggtggctgactaagtacttttttgccccactgtagactTTTAttccctattgtgttattgactgtacgtttgtttattccatgtgtaactctgtgttgttgtttgtgtcgcactgctttgctttatcttggccaggttgcagttgtaaatgagaacttgttctcaactgtcctacctggttaaataaaggcggaATAAAAAAATAGGGTAGAACACTTCACTAATAAAGAAATCCATATCAGGCAAGATAAAGATTGCAGTAATAAAAATAACCAGCAACGACAGACCATAGTCAACACTCACCTATTGTTGAAATCTGTTTGATGGTCTGCAAGAACAATCCCTGGAATTGCCCGAGCTCGGAGGAAACGCTGAAAGGAGGAGGGCGGGAGTGGTTGAGAAAAACCTGTCTCAACAAATGATAAGTTGAGACCAGCCGTGGAGGACTGTAAGTTTTTTACAAGATTCGTAACCTCGTCATGGACGGTGTTGTTCCTCCTGGACACAGGGTCTGAGTGAAGAAATAGGTTGGTGCCACTGCGCACTGCTACCTGTCCAATCTCCAGTATTGAGTGAACATTATCCAGGTCTATCACAAACATGTTATTCTTCATGTCATAAACCATTCGAGAGCTGCCAATGTAGTCAAATACTTCCCCGTGGAAGAAGGCAAAGAGGATATTCCGTGTGGGAGGGGCTTCCTGAGTGGCTTCACGTAGTGCCTGGGCAGCAGCCAGCAGAGTGACAAACCCTGAGACACTCCCCTCCGCTCCTGTAGAATCCTCCAAGAAAAATGCCCTGCTGTCCAGCCTGGCTGCTGCTATAACAACACTCTCGTTCTCCTTGTGACCAAAGGCGGTGCTGTTATAAGGCCGGATGAAAGTACACACATTATAACCACCAAGAGGGTCACACACCatcactgtgagagagagagagagagagagatgtctgtaAGATATACATGACAGTGTGTGTATTGACTACTCACGCATATACAATAATGCATCTTTGTATACCTGGGGAGGTGCTGAAGTCCATGCTGCTGCGTCTCATGCAGGTTGCAGTGTCAGTGACAGCATGCATATGAGAGAAGAGCTGCATGGCACACAGAGGGTACTGCAGGCCACTGCCGTTCACCACACGATTATGATCAAAGTAGCACTGTTTGATGACCTCTGTTTCATTGTCTTCTTTcagggagaagacagggaagTCAAATTCCTCATAGGACAGACCGTTCCCCCGAGGATTCCATACAGTCGTGTTACAGTGCGCTAAATTATGATCATAGGTTTCCGTGTAAACACCTGTTCTCATTGGGACATGTCGTATGTGGCGAGAACTCTGGTTGGCTAGTTTTTGGGACCACCACAACCCCTGCCACCCTGCTGGAGGCATTCTTCATCTTCATCATGATGGACttGGTGAAGAGGGATGACTCCAACAGGACCATATAAGGAGGATTGGGTCCTTTGCTCAAAGGCCATTCCAGATCTGCCTCAGACTCCAAGACATGGATCACCCCTGTATCACCTGATATCGAG

Function

NR:

description
PREDICTED: nicastrin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU846569 False 1907 lncRNA 0.49 13 74303106 74308955
TU846570 False 1057 lncRNA 0.47 5 74303106 74304882
TU846571 True 1654 lncRNA 0.46 8 74306258 74308955

Neighbor

gene id symbol gene type direction distance location
LOC118965552 NA coding upstream 23338 74275326 ~ 74279768 (+)
LOC110530563 LOC106569381 coding upstream 55819 74244401 ~ 74247287 (+)
LOC110530564 LOC106569383 coding upstream 72993 74228111 ~ 74230113 (+)
zte38 LOC106569397 coding upstream 313191 73982708 ~ 73991211 (+)
prdx1 nkef coding upstream 321927 73974656 ~ 73981179 (+)
si:dkeyp-66d1.7 LOC106569375 coding downstream 59182 74368137 ~ 74376776 (+)
ftr66 LOC106569374 coding downstream 67892 74376847 ~ 74382998 (+)
ltb4r2b LOC106569372 coding downstream 99430 74408385 ~ 74413205 (+)
sdr39u1 sdr39u1 coding downstream 115492 74424447 ~ 74428142 (+)
parp2 parp2 coding downstream 122789 74431744 ~ 74438581 (+)
G745746 LOC106569380 non-coding upstream 53361 74248353 ~ 74249745 (+)
G745737 tep1 non-coding upstream 83152 74218598 ~ 74219954 (+)
G745689 tep1 non-coding upstream 92056 74209489 ~ 74211050 (+)
G745646 LOC106600394 non-coding upstream 102397 74074951 ~ 74200709 (+)
G745655 LOC106569384 non-coding upstream 188092 74105268 ~ 74115014 (+)
G745796 NA non-coding downstream 3029 74311984 ~ 74312241 (+)
G745799 NA non-coding downstream 4560 74313515 ~ 74313778 (+)
G745800 NA non-coding downstream 5619 74314574 ~ 74315358 (+)
G745801 NA non-coding downstream 6463 74315418 ~ 74315636 (+)
G745803 NA non-coding downstream 9049 74318004 ~ 74318215 (+)
G745489 NA other upstream 582456 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 707868 73593637 ~ 73595238 (+)
G745083 NA other upstream 1052610 73249424 ~ 73250496 (+)
G744697 NA other upstream 1434724 72867101 ~ 72868382 (+)
G744696 NA other upstream 1438403 72862256 ~ 72864703 (+)
G746052 NA other downstream 643730 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 705689 75014644 ~ 75033896 (+)
G746936 NA other downstream 1018817 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 1041253 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 1070547 75379450 ~ 75383243 (+)

Expression


Co-expression Network