XLOC_026419 (slc25a39)


Basic Information

Item Value
gene id XLOC_026419
gene name slc25a39
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 29872819 ~ 29891500 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051483
gctgtgttgttttatttaggtCGTCTCTGAGCTGCTGCTGTGCGCATTCAATGAGACTGCAGAGCGGCGGAGGGGAGTCTCCGTTCAGAATGACAAAAACAACGCAGATGCACGAAAACCCTCGGGTTTAGAAAAAAGGTGGGCCGGCAGGATGGGGGATAGGCCTGCAGTTCGAATTTCGGCTGCGATCACACCCGTGCAGCAGATGCTGGCGTCTGGCACTGGGGCTGTGCTCACATCTCTATTTGTCACACCTCTGGATGTAGTGAAGATCAGACTTCAAGCGCAGCAAACTCCTCTCTTTCAAGCCATAGCAGCAGAATCAAGACCCTGGTTTAGGGTCACCCGGCCTTCAAAATggaaatgttttctttattgtaaTGGGTTGATGGACCACGTCTACGTATGTCAGAATATGTCTAGCTGCTCCAACTTGTACAAAACCTCCACCCACTTTAGTGGCACCTTGGATGCATTTGTAAAAATAACCCGCAACGAGGGCCTTCGATCTTTGTGGAGCGGACTTCCTCCCACACTGGTGATGGCGGTTCCTGCTACAGTCATTTACTTCACCTGCTATGACCAGTTGCGGGACTTCCTGTGTTACAGCATGGGCTATCATGGTGACCACATACCTCTCATAGCTGGAGGATTAGCAAGATTGGGAGCGGTGTCTGTGATCAGCCCTCTGGAGTTGGTTCGGACTAAGATGCAGTCCCGCCGGCTGCAGTACAGCGAGCTGATGGTGTGTATCCGCTCGTCTGTGGCTCAGGACGGCTGGTTATCTTTGTGGAGGGGCTGGGGACCCACTGTCCTACGGGACGTGCCCTTTTCTGCCCTGTACTGGTTCAACTATGAGCTAGTGAAGGCGCAGCTGTGTGAACACTACAGGACGCCGCAGGCCTCATTCACCATCAGTTTTACAGCAGGGGCCGTCTCTGGAGCAATAGCAGCAGTTCTGACCCTGCCATTTGATGTGGTGAAAACACGCCGGCAGATCCAGTTAGGAGAAATGGAGGCTCTTGGAGCAGTGTCCATGAAGAAACCGTCCTCCACATGGAACATGATGAGGAATATCTGGATTGACATGGGATACAAGGGCTTGTTTGCAGgtttTCTTCCAAGAGTGATCAAAGTAGCTCCAGCATGTGCAGTCATGATCAGCACTTACGAGTTTGGGAAGACATTCTTTCAAGAGCGTAATCTGCATCAGGCGAGGTGTGGACTTTGAGCTGGGCAAAAGGATCTGCGGTTTGTCCAAAAACTAGGCCGAGGAAACTGAGTGGGACTCCTTGTCAAACTACTGCAAACACTGTTGGTGAAGAGTCTCCAAAATCTTAAGTTGTTGGGTGAAGTGCCCACTGACTGGCACAAAGACATAAAAGCTGTGAGAGTTGACTTAATACGTTTGATGCATCTGAGATCACGGACTTTAGTTATGATGCATCAAGTAAACACACAGTTTTCCTCCAAACCCTGTGATGCCTTGGGGAACAAAACCAAAGCATGCTGGCAGAATCACTACCTCCCCACTCAACGAAATGGCTGCCGGTTGGACATGAAGATGTTGTATCTGCAGTGCATGGGTTCCCTTTTACTAAAGACTCAGCTCTGCCCTCTGCTGTTCAAGATGAAGAAAACCCAGGAGGAATGCATCAGCTACTACTTCAGCAGGGGATTCAGAGTACATTTCATTCAAAAATCAGATATTTAATTGTTCCTTTTTGTGTTTGTTATTTGATTCTTTTAAATTGGAGTCTTTGTCCTTTGTGGGGACATTAGACTCTGAAAGTCACTagaacttttttttaagttttgtttggTGCATTGAGAATGTAAaacactttattattaataataataattttattattataattattattattgttattttgtggCAAGGGATGTGCTAATGAATGGATCTCTTGTCTTTAACTATACATGTTCACTGCATTTAGTTCAGATTAAGCGATACCTACCTACTGATGTAAAACACACTGCTGACTTGAAATGACTAGACAGTTCTCATGTTTTgtctaataaaatatatataaaaagtc
>TCONS_00051484
CATTCAATGAGACTGCAGAGCGGCGGAGGGGAGTCTCCGTTCAGAATGACAAAAACAACGCAGATGCACGAAAACCCTCGGGTTTAGAAAAAAGGTGGGCCGGCAGGATGGGGGATAGGCCTGCAGTTCGAATTTCGGCTGCGATCACACCCGTGCAGCAGATGCTGGCGTCTGGCACTGGGGCTGTGCTCACATCTCTATTTGTCACACCTCTGGATGTAGTGAAGATCAGACTTCAAGCGCAGCAAACTCCTCTCTTTCAAGCCATAGCAGCAGAATCAAGACCCTGGTTTAGGGTCACCCGGCCTTCAAAATggaaatgttttctttattgtaaTGGGTTGATGGACCACGTCTACGTATGTCAGAATATGTCTAGCTGCTCCAACTTGTACAAAACCTCCACCCACTTTAGTGGCACCTTGGATGCATTTGTAAAAATAACCCGCAACGAGGGCCTTCGATCTTTGTGGAGCGGACTTCCTCCCACACTGGTGATGGCGGTTCCTGCTACAGTCATTTACTTCACCTGCTATGACCAGTTGCGGGACTTCCTGTGTTACAGCATGGGCTATCATGGTGACCACATACCTCTCATAGCTGGAGGATTAGCAAGATcttggtctctttattaatctggggtcgccacagc
>TCONS_00051485
AGATCTATCTAGGAGCTGGAGTGATGGAAGATAGCCGTTACCACACCGCTCATCGAGGGTTATCTAATTACTCTATTGCTGACCCACAACTGCTTTGTTTGGTTCTTATATTACAGTAGCAGCCAGGTGGGCCGGCAGGATGGGGGATAGGCCTGCAGTTCGAATTTCGGCTGCGATCACACCCGTGCAGCAGATGCTGGCGTCTGGCACTGGGGCTGTGCTCACATCTCTATTTGTCACACCTCTGGATGTAGTGAAGATCAGACTTCAAGCGCAGCAAACTCCTCTCTTTCAAGCCATAGCAGCAGAATCAAGACCCTGGTTTAGGGTCACCCGGCCTTCAAAATggaaatgttttctttattgtaaTGGGTTGATGGACCACGTCTACGTATGTCAGAATATGTCTAGCTGCTCCAACTTGTACAAAACCTCCACCCACTTTAGTGGCACCTTGGATGCATTTGTAAAAATAACCCGCAACGAGGGCCTTCGATCTTTGTGGAGCGGACTTCCTCCCACACTGGTGATGGCGGTTCCTGCTACAGTCATTTACTTCACCTGCTATGACCAGTTGCGGGACTTCCTGTGTTACAGCATGGGCTATCATGGTGACCACATACCTCTCATAGCTGGAGGATTAGCAAGAT

Function

symbol description
slc25a39 Predicted to enable metallochaperone activity. Acts upstream of or within heme biosynthetic process. Predicted to be located in mitochondrion. Is expressed in intermediate cell mass of mesoderm. Orthologous to human SLC25A39 (solute carrier family 25 member 39).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006783 heme biosynthetic process biological_process
GO:0006828 manganese ion transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016530 metallochaperone activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1250 Predicted to enable metallochaperone activity. Acts upstream of or within heme biosynthetic process. Predicted to be located in mitochondrion. Is expressed in intermediate cell mass of mesoderm. Orthologous to human SLC25A39 (solute carrier family 25 member 39).

Ensembl:

ensembl_id ENSDARG00000007449

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051483 False 2063 mRNA 0.46 12 29872819 29891500
TCONS_00051484 False 652 mRNA 0.50 8 29880530 29891456
TCONS_00051485 True 650 mRNA 0.49 7 29881523 29891218

Neighbor

gene id symbol gene type direction distance location
XLOC_026416 rpl3 coding downstream 1455 29867213 ~ 29871364 (-)
XLOC_026418 NA coding downstream 4087 29868635 ~ 29868732 (-)
XLOC_026417 BX901883.1 coding downstream 5279 29867404 ~ 29867540 (-)
XLOC_026415 NA coding downstream 9213 29835165 ~ 29863606 (-)
XLOC_026414 BX901883.6 coding downstream 102561 29770142 ~ 29770258 (-)
XLOC_026420 rpl27 coding upstream 2466 29893966 ~ 29899230 (-)
XLOC_026421 RUNDC1 coding upstream 10721 29902221 ~ 29910547 (-)
XLOC_026422 grna coding upstream 22927 29914427 ~ 29941357 (-)
XLOC_026423 bcat2 coding upstream 58484 29949984 ~ 29968055 (-)
XLOC_026424 hsd17b14 coding upstream 77643 29969143 ~ 29977495 (-)
XLOC_026413 BX901883.4 non-coding downstream 155674 29713211 ~ 29717145 (-)
XLOC_026425 NA non-coding upstream 103395 29994895 ~ 30004929 (-)
XLOC_026426 NA non-coding upstream 128336 30019836 ~ 30023485 (-)
XLOC_026427 NA non-coding upstream 145197 30036697 ~ 30039149 (-)
XLOC_026432 NA non-coding upstream 307536 30199036 ~ 30201831 (-)
XLOC_026439 NA non-coding upstream 803377 30694877 ~ 30696290 (-)

Expression


Co-expression Network