G745764 (copa)


Basic Information

Item Value
gene id G745764
gene name copa
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74322703 ~ 74325901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU846536
TCTCCTGCTTGTTGTCGACCACCAGCAGTGGCACAGACAGCAGGATGGCGCGGAAGCGTTCAACGGCCTCCTCAAAGCGGCCGGCAGTGGTGAGCTGGTAGCACTGCTGCAGGCGGGCGATGAGGTCAGAAAGACGAAGACCCACAGCAGGCAGCCCTTGCTTGGTCCCACAGTCCTTCCAGTTCCTCTGGGGGTTGCCACGCAGGCAGGGTAGAGAAGGCAGGCCCAGGTAGCAGGTCCGCCCGCGGGACAGAGTCTGCATGAACAGCTGCTTATAGGGCCCAAACTGCACCACCCCAACCTGGTCATGGAGTAACCTCATGGCGGTCTCAAATGAGCCTGCCAGGACGTGGTCCACAGGGAGCTGGGAGTTGTTGCACCACAGCTGTGTGGGGCTCATGCCCTTAGTGGGCGGGACAAAGAAACCATCTTCAGCCCCTCCTCCAGAGCCAGCTGACAACTCCAGCTCTGGAGGAAGGTCCAGATCTTCCTCCACCTCCcaacctcctccttcctccttcgcTGCACCTCCTTCCTCTCCTAATCCATCCTGGGCATCCATGAAGCCATCCTCATCCAGCTGAAGCTCTGCATCCTCTCCCCAGCCCTCTCCTCCTGGGGCATCAACATCCATGTCTGCAGCCATCTGACCAGCCTTCcCTTTGGCTGCAATGGCTCCCTCAAAGAAGCCCTTGGACACAGTAAGCAGGGGCCAGTTGGTATCCAGGGGGTTGATAGGTGGTGGTGGCTGCAGCAGCTGGGCATTGAGGTCCACCTCAGGGACAGTCTCCTTCTCCAGGTCAAATGTCTCTTTCAGGGATTCTGCCTCTTCGTCCATCCCGTGGGTAGCAGCAGTCAAATATGCCAGTGACTTCTGGCCACAGTTCTTCAGTATGCGAACTCTCTCGCTGACGTCCCCCAGATACAGAGCACCCTGGTAGTGTCCACTCATGTCCTTCCTGATCTCAGCGATCTTCATCATCTTGCGGAGCTTGGCCAGGTTACCAGTgatgaggtagaggaaggtgagCTTGTCGAAGTTCTTGGTCCTCTGGTAGCACATCTCCACGACCTGGTGGTGACCCTGCAGCAGCGCAGCCTCGCCCAGCCGCTCCCAGCAGCCCCTCTCATCCAGAGCCTTGGCAGCCTCCAACGCCACTTCAATGTTGCCACACTCCAGAGCTAGAGTGAAGCGGGTCTTCTCATCCTTGACAAAGTGCAGGGCTACCTCAGGGTAACCCTTCTTCTGCAGGTAGGAGATGATGGACTGGCCAACCAGCTTGGCGTTACGCACCATGTGCAAAACCTCTTCATATTTGCGGTTGACCAGGGCCAGTTTGAAGCGGTACTCCGTGGGGTCGATGGTCAGCACACGGGGCCTGCACTCACGGTCAAGACAGTAGACGCTGTTGCCTCTGACCCGGGTCACGTAGATGGGCAGGTCCAGAGTCCGGATGATACCATGATCACTACAGACAAGAGTAGAGTGTGATAAGAAAAGTTGGATACTCCCCTCGTCTCTCAAACGCATCACTGAAGGAGTAAACAGCTTTCATATTCCAGTATGTTCAAAAAGGACTAGGAAGGGAATGAATCAATATACTGTACTTCGAATATACTCTGAATAAAGTGTGCGTTAGTGGCGTCTTGTGCATTACCCTGAGGTGAGGGCGTATTTAATGTGGTTAGATGTGGTGTAAATGAAGACGCCACTCTCGTCCCAGGCTCCACTCTTCACACGGATGTTCTCATGGATGTTGCACAGACTCTCCAGCTTCCTGTTGCAGATCATAATTGCTGCAGAGGAAAGCAGAGATTTATCAACAAATTTAACAGCAGGTAAATCTGGGGTACTAGAGAGCGAGGGAACAGCTAAAAAGGGTGTAAATCTAGGATACATTGTTGACAACAGCTATAGAGAGTGAATCGTGGTAAGTTTAAAAACAGCAAGAGGGCCCAAAACCTTGACAGCCAAGCTGTAGAGAAAGTAGAGGACAGATAAGAGTGTAATCCTGATATTGGATCTGAGTGTGTTTAGAGTGTACTGTACGTACCGTGTTTAGCCAGCAGGGCCACGTGGCTGGTGTCAGCACTCCACACCACATACTTGACCTTGGCGATCTTCACGGTGGCCAGCGAGCGTTTCTGCTGCACGTCGAAGAGGGTGACCCCATCTGCGTCGCGCAGCAGCAGGGAGCCTGTCCCGGCGTAAAAGATCTCCTCACAGCTGGGCAcctgcaccttcttcacaatcTCATTCTTCAGGTTCTTG

Function

symbol description
copa Predicted to enable structural molecule activity. Acts upstream of or within notochord development and somite development. Predicted to be located in Golgi membrane. Predicted to be part of COPI vesicle coat. Is expressed in several structures, including axis; hatching gland; mesoderm; notochord; and pectoral fin. Orthologous to human COPA (COPI coat complex subunit alpha).

NR:

description
coatomer subunit alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU846536 True 2272 lncRNA 0.54 9 74322703 74325901

Neighbor

gene id symbol gene type direction distance location
LOC118965552 NA coding upstream 42935 74275326 ~ 74279768 (+)
LOC110530563 LOC106569381 coding upstream 75416 74244401 ~ 74247287 (+)
LOC110530564 LOC106569383 coding upstream 92590 74228111 ~ 74230113 (+)
zte38 LOC106569397 coding upstream 332788 73982708 ~ 73991211 (+)
prdx1 nkef coding upstream 341524 73974656 ~ 73981179 (+)
si:dkeyp-66d1.7 LOC106569375 coding downstream 42236 74368137 ~ 74376776 (+)
ftr66 LOC106569374 coding downstream 50946 74376847 ~ 74382998 (+)
ltb4r2b LOC106569372 coding downstream 82484 74408385 ~ 74413205 (+)
sdr39u1 sdr39u1 coding downstream 98546 74424447 ~ 74428142 (+)
parp2 parp2 coding downstream 105843 74431744 ~ 74438581 (+)
G745804 NA non-coding upstream 3015 74319445 ~ 74319688 (+)
G745803 NA non-coding upstream 4488 74318004 ~ 74318215 (+)
G745801 NA non-coding upstream 7067 74315418 ~ 74315636 (+)
G745800 NA non-coding upstream 7345 74314574 ~ 74315358 (+)
G745799 NA non-coding upstream 8925 74313515 ~ 74313778 (+)
G745810 NA non-coding downstream 19002 74344903 ~ 74347740 (+)
G745821 NA non-coding downstream 36538 74362439 ~ 74362681 (+)
G745826 NA non-coding downstream 53105 74379006 ~ 74379661 (+)
G745873 NA non-coding downstream 153499 74479400 ~ 74480069 (+)
G745489 NA other upstream 602053 73719716 ~ 73720650 (+)
G745410 LOC106569417 other upstream 727465 73593637 ~ 73595238 (+)
G745083 NA other upstream 1072207 73249424 ~ 73250496 (+)
G744697 NA other upstream 1454321 72867101 ~ 72868382 (+)
G744696 NA other upstream 1458000 72862256 ~ 72864703 (+)
G746052 NA other downstream 626784 74952685 ~ 74953842 (+)
nedd8 nedd8 other downstream 688743 75014644 ~ 75033896 (+)
G746936 NA other downstream 1001871 75327772 ~ 75328195 (+)
LOC110530987 LOC106569478 other downstream 1024307 75151419 ~ 75357954 (+)
G746951 LOC106591969 other downstream 1053601 75379450 ~ 75383243 (+)

Expression


Co-expression Network