XLOC_002642


Basic Information

Item Value
gene id XLOC_002642
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 13298839 ~ 13301973 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006012
TTGCAcacgcctgctgatcctgacagcgTAAATCCAATTCCAAAGTAGACGAGCCAATCGATCAGCAATCATCATTTACTGGCAGGCCAAACACGTCAGCAAGTACAGCCTTTTTTGGAGAAAAGAGCTTGATTTCCCATTATTTCCATGTTTGGCTTTGTTTTATAATGTTGCATGCCTGTCAAAGCCAGATGTATTGAAGAGATGCATAAATCTTGGACTACTGTTGCCTGTTAAATGGGGAAAAGGTGAACACAATGGTGTCCACAG

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0007215 glutamate receptor signaling pathway biological_process
GO:0051179 localization biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0010469 regulation of signaling receptor activity biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0099601 regulation of neurotransmitter receptor activity biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:1990351 transporter complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097447 dendritic tree cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0098984 neuron to neuron synapse cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0036477 somatodendritic compartment cellular_component
GO:0044309 neuron spine cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0099572 postsynaptic specialization cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0098793 presynapse cellular_component
GO:0098794 postsynapse cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0032279 asymmetric synapse cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0004971 AMPA glutamate receptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006012 True 270 lncRNA 0.43 2 13298839 13301973

Neighbor

gene id symbol gene type direction distance location
XLOC_002641 si:busm1-57f23.1 coding downstream 59472 13236100 ~ 13239367 (-)
XLOC_002640 musk coding downstream 119762 13080092 ~ 13179077 (-)
XLOC_002639 CT990561.2 coding downstream 646327 12648430 ~ 12652512 (-)
XLOC_002638 NA coding downstream 1400264 11895373 ~ 11898575 (-)
XLOC_002637 trim23 coding downstream 1458486 11790881 ~ 11840353 (-)
XLOC_002643 CR759894.1 coding upstream 3092 13305065 ~ 13305183 (-)
XLOC_002644 il11ra coding upstream 3637 13305610 ~ 13396720 (-)
XLOC_002645 cntfr coding upstream 158157 13460130 ~ 13772861 (-)
XLOC_002646 BX293994.2 coding upstream 305054 13607027 ~ 13607143 (-)
XLOC_002647 BX293994.1 coding upstream 310160 13612133 ~ 13612248 (-)
XLOC_002626 NA non-coding downstream 2511190 10784334 ~ 10787649 (-)
XLOC_002625 NA non-coding downstream 2584612 10712178 ~ 10714227 (-)
XLOC_002623 BX323065.1 non-coding downstream 2966412 10319308 ~ 10332427 (-)
XLOC_002622 NA non-coding downstream 3020306 10273729 ~ 10278533 (-)
XLOC_002648 BX000705.1 non-coding upstream 629596 13931569 ~ 13931696 (-)
XLOC_002653 CT027820.1 non-coding upstream 1430310 14732283 ~ 14732399 (-)
XLOC_002621 NA non-coding downstream 3010156 10261345 ~ 10288683 (-)

Expression


Co-expression Network