Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_026420 |
| gene name | rpl27 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 29893966 ~ 29899230 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| rpl27 | Predicted to be a structural constituent of ribosome. Acts upstream of or within erythrocyte differentiation. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 16. Orthologous to human RPL27 (ribosomal protein L27). |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0030218 | erythrocyte differentiation | biological_process |
| GO:0098556 | cytoplasmic side of rough endoplasmic reticulum membrane | cellular_component |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0022625 | cytosolic large ribosomal subunit | cellular_component |
| GO:0005840 | ribosome | cellular_component |
| GO:0015934 | large ribosomal subunit | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-4343 | Predicted to be a structural constituent of ribosome. Acts upstream of or within erythrocyte differentiation. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 16. Orthologous to human RPL27 (ribosomal protein L27). |
| ensembl_id | ENSDARG00000015128 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00051486 | False | 682 | mRNA | 0.45 | 5 | 29893966 | 29899172 |
| TCONS_00051487 | True | 487 | mRNA | 0.48 | 5 | 29893966 | 29899230 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_026419 | slc25a39 | coding | downstream | 2466 | 29872819 ~ 29891500 (-) |
| XLOC_026416 | rpl3 | coding | downstream | 22602 | 29867213 ~ 29871364 (-) |
| XLOC_026418 | NA | coding | downstream | 25234 | 29868635 ~ 29868732 (-) |
| XLOC_026417 | BX901883.1 | coding | downstream | 26426 | 29867404 ~ 29867540 (-) |
| XLOC_026415 | NA | coding | downstream | 30360 | 29835165 ~ 29863606 (-) |
| XLOC_026421 | RUNDC1 | coding | upstream | 2991 | 29902221 ~ 29910547 (-) |
| XLOC_026422 | grna | coding | upstream | 15197 | 29914427 ~ 29941357 (-) |
| XLOC_026423 | bcat2 | coding | upstream | 50754 | 29949984 ~ 29968055 (-) |
| XLOC_026424 | hsd17b14 | coding | upstream | 69913 | 29969143 ~ 29977495 (-) |
| XLOC_026425 | NA | coding | upstream | 95665 | 29994895 ~ 30004929 (-) |
| XLOC_026414 | BX901883.6 | non-coding | downstream | 123708 | 29770142 ~ 29770258 (-) |
| XLOC_026413 | BX901883.4 | non-coding | downstream | 176821 | 29713211 ~ 29717145 (-) |
| XLOC_026426 | NA | non-coding | upstream | 120606 | 30019836 ~ 30023485 (-) |
| XLOC_026427 | NA | non-coding | upstream | 137467 | 30036697 ~ 30039149 (-) |
| XLOC_026432 | NA | non-coding | upstream | 299806 | 30199036 ~ 30201831 (-) |
| XLOC_026439 | NA | non-coding | upstream | 795647 | 30694877 ~ 30696290 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
