XLOC_026427


Basic Information

Item Value
gene id XLOC_026427
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30036697 ~ 30039149 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053048
CATGTTGACATTCGAGGTGAGGGCACGTACATATGACTGTTTGGTTTCGCACCTGCTCATCCAGTGTTTTTTATCCACTCCCAAGCAGCCTGCCCCCTCCACCCCTTGCCCACTGCCGTTTCCTGACACGCGGCACCTTGTTTCATAGAAGTACTGCTTCAGTGGCGTAGCCTGGGTCGGGATGTAATCCATAATAGTGACATTATTTCCACGATGGTCCACTGCGGTTTTCTTCTTAGTCACCCACCCACTTTCGGCCTCACACACAGAGCGCTCACGGCCTTGTGTGTATTGGTCGACCTGTCGCTTGCGGCGGGCTCTAGGAACGTGGCCAGTTGAATCAGAAACACCCAAGAGTAAGTTCCTGTATGCCTCTTTGTCACCTCCGTGACTAGGTGTCGTAGAATCCATTGTGTGGCTTTCCCCATCCTCTACCTCATCACTGGCCAACAAGCCCAACTCCAGCATTAAGAGCAGAGGTGGATGTTTGGGTGGGGAAAGACTCGAGGAGAAGAGCACTCGAGGATGGGCGTCCAGCAAAAACAGCTGATCTTCTTCGATCCGAAAGCCTGGATCCATTTCAAACTCTTTCCCTTGTGGTTGAACTTCGTCCTGGTTGTCCTGTACAGGTAACTCAAGACCTTCAAGAGGTTTATTTCTTGCATTTGTGTCATCTTTAAGAAAAGTCTCAACACTACTTTCTTCGTGTAACTTTCTACGGTCAAGCTGGCCAAAACTGGCCTTTTCGACCACATTCTTTTGTGATTTGTATTTCCTATGATCATTCGTCCTGGATGCATCTTCTCTGGTAGTCCTATCTCCTCCACCTGTGTAGTCCTGCTTTGTGTTGTTGAAAAGGTTGTGCTGTGTTAAATGATTCTCTTGGTTTGTTCTACCCTTGGATATACGGTCACCCTCTGTTCTAGGAGGAGCTACATCAGGTGTGCTGTAGTTGTTGTCAGAAACAGCACCATGAGGGTGCTTGTCCACTGATGAGTTGGTCTCAGCTTTCAGGACACTGGTGCTGTTGCTGTCGTTTCTGCCAGGCTCTATCGTCGCGGCAACAAGCCCGGGCACAGGACTTTGAGGGAAAGGCAGGGCCGAGGCGATCACCATGGCAACCAGGGGAAGCCAGTGCATCACTCCCAAGACGTGTCAACTATGAATAGGTAAGAAAGCAAGAATTAAAAAGTGCACGaaaaatgaaattacaaatatttacttCACAATGTAAGGGGTAACATATACATTTTAAGGATGTGTTCACACTTCTAGTTCAGTTCACTTGGTTAATTTGGTCCAAACCAAACATAAGAGGTATATTTGATGATAGAACTTATCGAACTTTGAAAATAATGCTGATAGTGCTTGTTGTTTGTACATGCAATgctattttttcagtttatttttcaaTGTTGCTTCTATGATAGGAAAAAAACTGATAACTGGGACTGAGATCCACCCTATGTCAGTCTGCTTGTTTGATGTGCACCAGGTTTAGATATAAACTTTCACAGCAACACAAAAACAGTAATCTCACAAGAATTTGCTTCAACTGAACCTGAatctgccaagtgtgaacacactctATGACAACCCTGAATCTGCCGGTGGATCTTATCTCTCTGTAGTTGTTAAACATAATCTATAATTCATCTTATGTAGACCTATATCTAATGTGTCTATAACGCCCCATTCTCATAGGGCGTCCATCTACTTTGAATGGGTGGCGTCAAGCGCAGATTAACTGAATTGTGGATACGTTGGCGCCGCTTTAgcagcgttgctcgctgcagaagttgggaatttcttaacttttcaagcaccaacggaagcgtcagccaatcagattgctttatgcaaataccccagttCAGACATTAGCCGACCgcagactaatttcattggtTGACACTGCTATGAtaatcgcgtcagccccaacttcagataCGCTCTCCATCAAGGGTTGAAACTAAAAAGTGTGAATCGGTGTTAGCCTACTTGTTcttaggtaacgtgttttggctgagtgtaAGGATAGGTTAATAAATCTGATTCTACATGTTTGATCGAATGTTTGCCTTTACTcctttattgtataacaatattgTACtcaatacttttataattattattgactATTAAAATTATAGCTATAGCTACTGATTATTATATTCAGCTATTGGTTATCTCATATTTCACATGCATTTCCTGATAATGTTTACACATTTCTGATAATGTTTATTGTGTGCATATAGCCTGACATTAAGTGCGTATTGCCAAAACTACACAGTGAGCCtgatgtttcatatttttcaatgatAAAAGGAGGCAGctgttttgttatatatttgCATACAGTGGTGACAGCCATATAAATATGTACatgatgcctcaacatttttggtgtctgttatgtttaaattgttaatataaaatgaaaagaGACAGTg

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053048 True 2453 lncRNA 0.43 1 30036697 30039149

Neighbor

gene id symbol gene type direction distance location
XLOC_026426 NA coding downstream 13212 30019836 ~ 30023485 (-)
XLOC_026425 NA coding downstream 31768 29994895 ~ 30004929 (-)
XLOC_026424 hsd17b14 coding downstream 59202 29969143 ~ 29977495 (-)
XLOC_026423 bcat2 coding downstream 68642 29949984 ~ 29968055 (-)
XLOC_026422 grna coding downstream 95340 29914427 ~ 29941357 (-)
XLOC_026428 ppfia3 coding upstream 4862 30044011 ~ 30123113 (-)
XLOC_026429 nucb1 coding upstream 101431 30140580 ~ 30153242 (-)
XLOC_026430 ccndx coding upstream 114817 30153966 ~ 30158395 (-)
XLOC_026431 tbc1d17 coding upstream 127797 30166946 ~ 30186298 (-)
XLOC_026432 NA coding upstream 159887 30199036 ~ 30201831 (-)
XLOC_026418 NA non-coding downstream 167965 29868635 ~ 29868732 (-)
XLOC_026417 BX901883.1 non-coding downstream 169157 29867404 ~ 29867540 (-)
XLOC_026415 NA non-coding downstream 173091 29835165 ~ 29863606 (-)
XLOC_026439 NA non-coding upstream 655728 30694877 ~ 30696290 (-)
XLOC_026441 BX682556.2 non-coding upstream 761392 30800541 ~ 30800658 (-)
XLOC_026446 NA non-coding upstream 1002803 31041952 ~ 31058290 (-)
XLOC_026450 NA non-coding upstream 1054063 31093212 ~ 31093764 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02311794_02313206 NA coding CI01000069 null 2311794 ~ 2315010 (+)
bowfin (Amia calva) AMCG00008971 NA misc CM030126.1 CM030126.1 16063554 ~ 16073935 (-)