G746836


Basic Information

Item Value
gene id G746836
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75363750 ~ 75368229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU847825
gttcaagggggccgaatactttcgcaaggcactgtaagtcagaGTGATGCTTCCGCTGATTGATCTAAATCTGGAGAGGCCTTGGCTTGGAGTGCTGCTGTCACTAAACTACTTGATTGAACTGATTGTCACCTCCGGAGAAAAGGGAAGGAAACACCAAATTGGTCCAATCAAGgcatgattagttgaatcagtcGCCTCCAGACGCAGCggcactccaggaccagggcTTACTATTCCTGGTTAACTTTTTAAAAATGATTGAGAGTCAGAAAGGAAAGTCAGATTGTCAGGAGATTTATCAAGCTGTTTACCAAGAccattaaatcctagtaaaaatataGTGCATTGTAATTGCAGGTCCTGACATACCTACATGTAGTATTTCAGGGGTGTGTGGTTctactctgtgtgtgttctggagGGTGGAAGGTGAACTTTGAACCCCACCAGACAACCCCAGGTTTGTCTCCCTTTGGGGCTTCATTGCTCCTGCACGATGTTGATAAAATTCCACGATGGCGTGTTGAATAAAGTGTATTTATTACTCTGTT
>TU847826
gttcaagggggccgaatactttcgcaaggcactgtaagtcagaGTGATGCTTCCGCTGATTGATCTAAATCTGGAGAGGCCTTGGCTTGGAGTGCTGCTGTCACTAAACTACTTGATTGAACTGATTGTCACCTCCGGAGAAAAGGGAAGGAAACACCAAATTGGTCCAATCAAGgcatgattagttgaatcagtcGCCTCCAGACGCAGCggcactccaggaccagggcTTACTATTCCTGGTTAACTTTTTAAAAATGATTGAGAGTCAGAAAGGAAAGTCAGATTGTCAGGAGATTTATCAAGCTGTTTACCAAGAccattaaatcctagtaaaaatataGTGCATTGTAATTGCAGGTCCTGACATACCTACATGTAGTATTTCAGGGGTGTGTGGTTctactctgtgtgtgttctggagGGTGGAAGGTGAACTTTGAACCCCACCAGACAACCCCAGGTTTGTCTCCCTTTGGGGCTTCATTGCTCCTGCACGATGTTGATAAAATTCCACGATGGCGTGTTGAATAAAGTGTATTTATTACTCTGTT
>TU847827
gttcaagggggccgaatactttcgcaaggcactgtaagtcagaGTGATGCTTCCGCTGATTGATCTAAATCTGGAGAGGCCTTGGCTTGGAGTGCTGCTGTCACTAAACTACTTGATTGAACTGATTGTCACCTCCGGAGAAAAGGGAAGGAAACACCAAATTGGTCCAATCAAGgcatgattagttgaatcagtcGCCTCCAGACGCAGCggcactccaggaccagggcTTACTATTCCTGGTTAACTTTTTAAAAATGATTGAGAGTCAGAAAGGAAAGTCAGATTGTCAGGAGATTTATCAAGCTGTTTACCAAGAccattaaatcctagtaaaaatataGTGCATTGTAATTGCAGGTCCTGACATACCTACATGTAGTATTTCAGGGGTGTGTGGTTctactctgtgtgtgttctggagGGTGGAAGGTGAACTTTGAACCCCACCAGACAACCCCAGGTTTGTCTCCCTTTGGGGCTTCATTGCTCCTGCACGATGTTGATAAAATTCCACGATGGCGTGTTGAATAAAGTGTATTTATTACTCTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU847825 False 554 lncRNA 0.44 2 75363750 75368229
TU847826 False 554 lncRNA 0.44 2 75363750 75368229
TU847827 True 554 lncRNA 0.44 2 75363750 75368229

Neighbor

gene id symbol gene type direction distance location
LOC110530987 LOC106569478 coding upstream 5796 75151419 ~ 75357954 (+)
psmb5 LOC106569426 coding upstream 267092 75088776 ~ 75096658 (+)
LOC110530986 LOC102210751 coding upstream 278114 75084467 ~ 75085636 (+)
nedd8 nedd8 coding upstream 329931 75014644 ~ 75033896 (+)
homeza homez coding upstream 399301 74958190 ~ 74964449 (+)
LOC110530620 LOC106569477 coding downstream 20398 75388627 ~ 75444838 (+)
LOC110530623 LOC106569476 coding downstream 122606 75490835 ~ 75522652 (+)
tgm1l1 tgm1 coding downstream 176695 75544924 ~ 75566032 (+)
LOC110530628 LOC106569474 coding downstream 227461 75595690 ~ 75609631 (+)
LOC110530629 LOC106569473 coding downstream 245711 75613940 ~ 75618260 (+)
G746840 NA non-coding upstream 177 75362841 ~ 75363573 (+)
G746839 NA non-coding upstream 1560 75360221 ~ 75362190 (+)
G746835 NA non-coding upstream 3983 75358584 ~ 75359767 (+)
G746938 NA non-coding upstream 20250 75343104 ~ 75343500 (+)
G746937 NA non-coding upstream 27377 75336034 ~ 75336373 (+)
G746951 LOC106591969 non-coding downstream 11221 75379450 ~ 75383243 (+)
G746993 NA non-coding downstream 96161 75464390 ~ 75464612 (+)
G746995 NA non-coding downstream 101682 75469911 ~ 75470111 (+)
G747035 NA non-coding downstream 171026 75539255 ~ 75543094 (+)
G747038 NA non-coding downstream 174738 75542967 ~ 75543486 (+)
G746936 NA other upstream 35555 75327772 ~ 75328195 (+)
G746052 NA other upstream 410096 74952685 ~ 74953842 (+)
G745489 NA other upstream 1643100 73719716 ~ 73720650 (+)
G747680 NA other downstream 747464 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 871721 76239950 ~ 76394329 (+)
LOC110530655 LOC106569480 other downstream 1083341 76451222 ~ 76453376 (+)
G748432 NA other downstream 1338501 76706730 ~ 76708278 (+)

Expression


Co-expression Network