G747118 (LOC106569490)


Basic Information

Item Value
gene id G747118
gene name LOC106569490
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75688365 ~ 75697197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU848166
ATGCCTTTAATACCAAAACAAATAAACATTGAAATTGTTTAatgtttgtatttgtttaacatttatttaactaggcaagtcaataaaGACATTATCTCCCAAAAAATCATGTCTATGTTTGCATTTAAGCCTCTGTTTTGGATTTGTCCACTTTTTTAACAGTGTTCCCtaagtcaatgaagagcacattcttatttgcaatggCAGCCTTTTCACTAATAAAATCTTCATCAGTAACATATCCGTGTAACGTGAGTCATATAATGTAcattatacacagagagaaagaccatTGCAGATGGCAGTTTTAATGTCCTTGTGTGCACTTATGGCAGAACTGGTCCACATGTATGCATATAAACATgcaaactcacacacacgcacacacgcacgcacgcacgcacacacgcacacacgcacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgtcaaagcATCCCTCCATGGGAAACCACATGCCTAGTTGTGGAACAACAGACATAAACAGGTGCACTTTTGTAAACAACAAAAGCATTGTCTCCTAAAGGTCCAATTGAATACACAtgtgcgcacaaacacacacacacacacacacacacacgtacaagtcgtcccacttcacatttccatatagGCCGTCTCTGTTGAAAAAGATAAAAGCATTACAACTATATTACAAGCACTGTgtgagtgatgtgtgtgtgtgtgtgtgttgatgtccTACCACTCCGCAGCCTCTCGTCTCTCAGCTGTGTTTTGTCCAGGGGGTGTGTGAGCGGAGGTATGCTGTCAGCACCGACCCCCTCTCTGCAGCTCTCTATCAGCTTCTCCAGAGTCCCGAAACACTGCAGCATCTGCCCAGGagataaCTGAAGTGTCCATCCTTCAGAGGAGTGGTGGATTCTGTAAGTGTGGACGTACGGTGTCTTTCTCACGCAGAGGCAATACATTCCTTGCAGACTCTCACTGTCCCGCAGGAGAAAGCTCCCCTCTCTACCATGCCTCTCCAGCAACCTTTCCGTTTTCCCCTTACCGATTTTACCGTAGTAGATAGACCGGACCAGCGCGCTCTCACTCTCCGGCTCCATGAGCGTGAAACTTTGGAGATGAGCACCACTGTCACCCTTGCGTGCCATGGAGCCCTGAGAGAGTGCGCAGAAAGACAGACTGTGGGAAAGGGCGT
>TU848167
ATGCCTTTAATACCAAAACAAATAAACATTGAAATTGTTTAatgtttgtatttgtttaacatttatttaactaggcaagtcaataaaGACATTATCTCCCAAAAAATCATGTCTATGTTTGCATTTAAGCCTCTGTTTTGGATTTGTCCACTTTTTTAACAGTGTTCCCtaagtcaatgaagagcacattcttatttgcaatggCAGCCTTTTCACTAATAAAATCTTCATCAGTAACATATCCGTGTAACGTGAGTCATATAATGTAcattatacacagagagaaagaccatTGCAGATGGCAGTTTTAATGTCCTTGTGTGCACTTATGGCAGAACTGGTCCACATGTATGCATATAAACATgcaaactcacacacacgcacacacgcacgcacgcacgcacacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU848166 False 1251 lncRNA 0.46 4 75688365 75691854
TU848167 True 473 lncRNA 0.38 2 75688365 75697197

Neighbor

gene id symbol gene type direction distance location
LOC110530632 LOC106569469 coding upstream 15544 75666314 ~ 75672821 (+)
trnae-cuc-7 NA coding upstream 26845 75661449 ~ 75661520 (+)
LOC110530631 catip coding upstream 43071 75641254 ~ 75645294 (+)
LOC110530629 LOC106569473 coding upstream 70105 75613940 ~ 75618260 (+)
LOC110530628 LOC106569474 coding upstream 78734 75595690 ~ 75609631 (+)
LOC110530636 LOC106569468 coding downstream 98060 75795257 ~ 75799474 (+)
LOC110530988 NA coding downstream 104076 75801273 ~ 75826734 (+)
LOC110530640 LOC106569461 coding downstream 261811 75959008 ~ 75997054 (+)
LOC110530643 LOC106569460 coding downstream 310074 76007271 ~ 76044709 (+)
LOC110530645 LOC100194734 coding downstream 364672 76061869 ~ 76071906 (+)
G747098 NA non-coding upstream 17178 75670792 ~ 75671187 (+)
G747065 NA non-coding upstream 81132 75605375 ~ 75607233 (+)
G747038 NA non-coding upstream 144879 75542967 ~ 75543486 (+)
G747035 NA non-coding upstream 145271 75539255 ~ 75543094 (+)
G746995 NA non-coding upstream 218254 75469911 ~ 75470111 (+)
G747508 NA non-coding downstream 72443 75769640 ~ 75770618 (+)
G747516 NA non-coding downstream 85080 75782277 ~ 75782622 (+)
G747517 NA non-coding downstream 85861 75783058 ~ 75783283 (+)
G747525 NA non-coding downstream 104776 75801973 ~ 75802216 (+)
G747528 NA non-coding downstream 110628 75807825 ~ 75808298 (+)
G746951 LOC106591969 other upstream 305237 75379450 ~ 75383243 (+)
LOC110530987 LOC106569478 other upstream 331208 75151419 ~ 75357954 (+)
G746936 NA other upstream 360170 75327772 ~ 75328195 (+)
nedd8 nedd8 other upstream 654469 75014644 ~ 75033896 (+)
G746052 NA other upstream 734711 74952685 ~ 74953842 (+)
G747680 NA other downstream 418496 76115693 ~ 76115986 (+)
G747987 cah12 other downstream 542753 76239950 ~ 76394329 (+)
LOC110530655 LOC106569480 other downstream 754373 76451222 ~ 76453376 (+)
G748432 NA other downstream 1009533 76706730 ~ 76708278 (+)
G748905 NA other downstream 1453466 77150663 ~ 77177349 (+)

Expression


Co-expression Network