XLOC_026433 (zgc:195001)


Basic Information

Item Value
gene id XLOC_026433
gene name zgc:195001
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30202863 ~ 30218504 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051512
AGAGTCGAAAGACACTCATCCACACCAGCAATGCCCATTAGTAGCCCAAGCACCAACGGAATCATGCCTGAAgcaaagaaagcagGAAGAAAAgggacaaaaacagaagcaaaatCTGCAGCAAAAACACCACCATATGAACCTAACATCCCTGAGCCCAACACTAGAGCTGAGCTGATGAAGTACTGGATGAACATCTCTCTTGATGACAGAACTGCTCAGAAAATGTTGTGGCTCTCAGAAGGGGGAACCAAAGTGTCGCGCAAGTCAGAGGAAGTGTGTCCTGTTCTGGACAGGCCAGAGAGATATGAACATTCACCACAGGTGCTGTGTAAGGAGGGCATTCTGGGCAGTCGTGGGTACTGGGAAGTGGATTGCGATGGCTGGGTGGTGATCGGGGTAGCCTGTGAAAATGCAGGCCGGAAGGCTAAGGATGGCCCATGTGGTCTGGGAGAGAATGACCTGTCGTGGGGTGTGGGCTGGGCCGGGTCCTGCTACCACGTCTGGCACAATGGAGTGAACGTAGAAATCCAAGCTCCACTCAGCCCAGTCATCGGCGTCTACGCCGACCAGCCAGCAGGCATCATCAAGTTCTTCCTTGTGCAAGAGGGAGAGAACGGCTCCAAGGAGGTCCGACTGGTTCATCAGTTTACAACCAGCATCACTGATAGGCTCATGCCTGGTTTCTGGGTGGGCAGAAACTCCTACTGCCAGATCCGAAAGAAAGATCAGTAGAGGGTGAATATTAGGGATGGGCGGTATCTTAACGTTTGCGATTTATCAATATAAAATTCTTCCCGCGAGAGTAATGATAAAACCTGCAACAtaacacaacatttttaaaatatctgttaattaaccatttccatattttgtgattcacaggtgttttctgtttatttataattataaataacattacAGGACcttgctctgttgacttttattatttaacactgcagtttaacaaagtggatttattgatattttactAGTTTGAAACAAgatattgtataaaaaataaccTTCATTGAAATAAGCCCTGTGAGTTTGTTACCAGGTTTTTGCACTGTAAGTTCCAacatcaacccagacaatatatcacttaaaacaattaaaatgccattaaaagtcactttttcaaacttttcaacatcaaaagttgttatACTTAAGattaagctcccataatgcaattcaacagtataaataaatgaaacatatcACAAAATATTGGCACTACtgttaatttacaaataattttaggGTACAATCTGCCTCTACACTCTGAAACTGGTTTGGTCAAGGGTGTACAATgtgacaaaacataaataaaacagccTACAAAGAAAAAACGTATTAAAAATGCAATTGTTagcacatttaaaatacagttttgtcTTTTTACAAGCAAAAAGATTTAATGACATACCTTTACCACTTCAAAGCATCatcaacattattttattttttagagtgaTGAAGTTACGTGTATCAGccttacattataaatatacttgtgcttacaacaaaaaaataaataaaaatgaacacaaaacagTGCTCTCTTTCGATTCAGGACTTTTTTGTCTCACAgttaataaatgcaaattatcGTCATCGACAGTTTTCTCAGTAAATACCACAAAATATCGTAATCTAAGTCCACATCGCCCATCCCTAGTGAATATATGAAGATAAAAGGTCTTGGAATGAAACAGGGTAAGGGAAGGACGGCTATGCAAC

Function

symbol description
zgc:195001 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-173 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000070484

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051512 True 1746 mRNA 0.40 5 30202863 30218504

Neighbor

gene id symbol gene type direction distance location
XLOC_026432 NA coding downstream 1032 30199036 ~ 30201831 (-)
XLOC_026431 tbc1d17 coding downstream 16565 30166946 ~ 30186298 (-)
XLOC_026430 ccndx coding downstream 44468 30153966 ~ 30158395 (-)
XLOC_026429 nucb1 coding downstream 49621 30140580 ~ 30153242 (-)
XLOC_026428 ppfia3 coding downstream 79750 30044011 ~ 30123113 (-)
XLOC_026434 emc10 coding upstream 22733 30241237 ~ 30248301 (-)
XLOC_026435 lrrc4ba coding upstream 151261 30369765 ~ 30434016 (-)
XLOC_026436 med25 coding upstream 235849 30454353 ~ 30488100 (-)
XLOC_026437 syt3 coding upstream 296861 30515365 ~ 30625219 (-)
XLOC_026438 si:ch211-51c14.1 coding upstream 446691 30665195 ~ 30685401 (-)
XLOC_026427 NA non-coding downstream 163714 30036697 ~ 30039149 (-)
XLOC_026426 NA non-coding downstream 179378 30019836 ~ 30023485 (-)
XLOC_026425 NA non-coding downstream 197934 29994895 ~ 30004929 (-)
XLOC_026418 NA non-coding downstream 334131 29868635 ~ 29868732 (-)
XLOC_026439 NA non-coding upstream 476373 30694877 ~ 30696290 (-)
XLOC_026441 BX682556.2 non-coding upstream 582037 30800541 ~ 30800658 (-)
XLOC_026446 NA non-coding upstream 823448 31041952 ~ 31058290 (-)
XLOC_026450 NA non-coding upstream 874708 31093212 ~ 31093764 (-)
XLOC_026453 NA non-coding upstream 955629 31174133 ~ 31177209 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G274207 NA non-coding CI01000069 null 2412265 ~ 2423194 (+)
mexican tetra (Astyanax mexicanus) G228884 NA non-coding NW_019170698.1 APWO02000296.1 134220 ~ 134445 (+)