XLOC_026435 (lrrc4ba)


Basic Information

Item Value
gene id XLOC_026435
gene name lrrc4ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30369765 ~ 30434016 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051516
ATGCACCTATGCTGTTGTTCTCCTcctatctctctgtctgtttcaTATTCATCCCTTTCTATTAAGCCTTCCTCATGCTTCTCTCTCTGGgagaaattattaatattaatgtatctCGCAGTGGGGGCCGCCTCCACCTGTCCTGCGGTGTGCAGCTGTTCCAATCAAGCTAGTCGAGTGATTTGCGCAAGACAACACTTAGAAGAGGTGCCCGACAATATATCGAACAACACACGATACCTCAACCTACAGGAGAACACCATACAGGTGATAAAATCAGACACATTCAAGCATTTGCGGCATCTGGAGATCCTCCAGCTCTCCAAGAACCAGATTCGACAGATAGAGGTTGGTGCATTCAATGGCCTTCCAAACCTCAACACTCTGGAACTGTTTGACAACCGCCTCACGCTGGTGCCATCGCAAGCTTTTGAGTACCTTAGCAAGCTGCGGGAACTGTGGTTACGAAACAATCCCATCGAGACCTTACCAGGCTACGCATTTCACCGCGTTCCCTCGCTGCGGCGTCTTGACCTCGGAGAACTCAAGAAGCTGGATTATATATCTGACGCAGCCTTTGTTGGACTCATCAATCTGCGCTACCTGAACTTGGGTATGTGTGGCCTGAAGGACATCCCTAACTTGACTCCCCTGGTGCGACTGGAGGAGCTAGAGTTGTCTGGGAACAGACTGGAAATCATCAGACCAGGATCTTTCCAAGGCCTGGAATCTTTGCGCAAGCTATGGCTCATGCACTCTCAGATGTCAGTCATTGAGCGTAATGCTTTCGATGATCTCAAGAATCTTGAGGAGCTCAACTTATCTCACAATTCCCTGCACTCTTTGCCCCATGACCTTTTCACTCCACTTCAAAAGCTGGAGCGAGTGCACCTTAACCACAACCCATGGGTTTGCAACTGCGATGTGCTGTGGCTAAGCTGGTGGCTAAAAGAAACTGTGCCGAGCAACACAACTTGTTGTGCACGATGCCATGCACCCCCCTACCTGAAGGGAAAATACATTGGGGAATTGGACCAGAGCCATTTCACTTGCTATGCCCCTGTCATTGTGGAGCCACCCACCGACCTCAATGTAACGGAGGGCATGGCTGCCGAGCTCAAGTGTCGCACTGGTACGTCTATGACCTCTGTGAATTGGATCACACCAAATGGCACCCTAATGACCCATGGCTCCTATCGTGTCAGGATTTCAGTGCTGCATGATGGCACATTGAATTTCACCAATGTTACACTGCGTGACACTGGACAATACACCTGCATGGTGACCAACTCAGCTGGGAACACTACGGCAACTGCTGTCCTGAATGTGACCGCAGCAGACGTTAGTGTCAACTACACCTACTTCACCACAGTCACAGTAGAAACAGAAGATTCTGCCTTGCGTACCTTTAACGAGACTTTCATCCATATTCCTGGTCCGACCCCTTCTGGGCATCTCTGGCATGAAGTTGTTCCCACAACTGCCTCTTCTCTCTCAATCTTTGCAACCAAACCCACATTCACAGTCCCCATTTCTGAGCCCAGTTACCCCTCTGGACTGGATGACGTGATGAAAACGACCAAGATCATCATTGGTTGTTTTGTGGCCATTACCTTCATGGCTGCTGTCATGTTGGTGGTGTTCTACAAGCTGAGAAAGCAGCACCAGTTGCACAAACATCATGGGCCGGCACGAGCCATTGAAATCATTAATGTTGAAGATGAGATTGGAGCTGGAACGGTACCCCAAATAGGGTCTGGAGGAGCAGACCATCTTAATCATTACTACAAGCCCCATCACTTCAACAATAACATGATGGGTCTGGCACACTGCATATCAATAAAGCTCCTTAACGTTGACATTCATGAACCTTGA
>TCONS_00051517
AGGCTAGAGGAGACATCGACTCCGCACCAGAGCTTTTGAaggatatatttaaattaaaagcaaagGGAAAAGCGACTAGTAAAACATGTATTCATCACAAAGAGGCCTGTCAAAGAAGAGGAGTTGTTAAGGCTAAGGCGACACAACTTATGTAATTGtatccatataaaaaaaaaaataagcaaggaCAAGATAAGCCACCGACCAAGGAGATGGAGGatttctgctaaaaaaaaaatgcaggagtGACATCTATTAAAGAGACGTCATACGAAAGACACTGGAATAAGCCTATCATCCTCTTTGGAATAAAGGAAGGGTCATGACCCAGTTGCCATGCGCATCACCACGGTGACCAGCCTTCCTAGTCCCTCCCCCCTCCTCCTCTTATTGGTCCAGCTGCTGTTGCGGCTCCTCCTCCCAGGTCAAGAGGCAGTGGGGGCCGCCTCCACCTGTCCTGCGGTGTGCAGCTGTTCCAATCAAGCTAGTCGAGTGATTTGCGCAAGACAACACTTAGAAGAGGTGCCCGACAATATATCGAACAACACACGATACCTCAACCTACAGGAGAACACCATACAGGTGATAAAATCAGACACATTCAAGCATTTGCGGCATCTGGAGATCCTCCAGCTCTCCAAGAACCAGATTCGACAGATAGAGGTTGGTGCATTCAATGGCCTTCCAAACCTCAACACTCTGGAACTGTTTGACAACCGCCTCACGCTGGTGCCATCGCAAGCTTTTGAGTACCTTAGCAAGCTGCGGGAACTGTGGTTACGAAACAATCCCATCGAGACCTTACCAGGCTACGCATTTCACCGCGTTCCCTCGCTGCGGCGTCTTGACCTCGGAGAACTCAAGAAGCTGGATTATATATCTGACGCAGCCTTTGTTGGACTCATCAATCTGCGCTACCTGAACTTGGGTATGTGTGGCCTGAAGGACATCCCTAACTTGACTCCCCTGGTGCGACTGGAGGAGCTAGAGTTGTCTGGGAACAGACTGGAAATCATCAGACCAGGATCTTTCCAAGGCCTGGAATCTTTGCGCAAGCTATGGCTCATGCACTCTCAGATGTCAGTCATTGAGCGTAATGCTTTCGATGATCTCAAGAATCTTGAGGAGCTCAACTTATCTCACAATTCCCTGCACTCTTTGCCCCATGACCTTTTCACTCCACTTCAAAAGCTGGAGCGAGTGCACCTTAACCACAACCCATGGGTTTGCAACTGCGATGTGCTGTGGCTAAGCTGGTGGCTAAAAGAAACTGTGCCGAGCAACACAACTTGTTGTGCACGATGCCATGCACCCCCCTACCTGAAGGGAAAATACATTGGGGAATTGGACCAGAGCCATTTCACTTGCTATGCCCCTGTCATTGTGGAGCCACCCACCGACCTCAATGTAACGGAGGGCATGGCTGCCGAGCTCAAGTGTCGCACTGGTACGTCTATGACCTCTGTGAATTGGATCACACCAAATGGCACCCTAATGACCCATGGCTCCTATCGTGTCAGGATTTCAGTGCTGCATGATGGCACATTGAATTTCACCAATGTTACACTGCGTGACACTGGACAATACACCTGCATGGTGACCAACTCAGCTGGGAACACTACGGCAACTGCTGTCCTGAATGTGACCGCAGCAGACGTTAGTGTCAACTACACCTACTTCACCACAGTCACAGTAGAAACAGTGGAGACTACAGGAGAGGAAGATTCTGCCTTGCGTACCTTTAACGAGACTTTCATCCATATTCCTGGTCCGACCCCTTCTGGGCATCTCTGGCATGAAGTTGTTCCCACAACTGCCTCTTCTCTCTCAATCTTTGGCTCATCGTCTTCTCCTCGAGCAACCAAACCCACATTCACAGTCCCCATTTCTGAGCCCAGTTACCCCTCTGGACTGGATGACGTGATGAAAACGACCAAGATCATCATTGGTTGTTTTGTGGCCATTACCTTCATGGCTGCTGTCATGTTGGTGGTGTTCTACAAGCTGAGAAAGCAGCACCAGTTGCACAAACATCATGGGCCGGCACGAGCCATTGAAATCATTAATGTTGAAGATGAGATTGGAGCTGGAACGGGCCTGCGTGGCAGCGGCATCTCAGGAGGATCCACAGTACCCCAAATAGGGTCTGGAGGAGGCGGACAGAGTTTGCGGCTGCACCATCCTGAAATTGTCAACCTCCCCAACCTTGCACGAGCAGACCATCTTAATCATTACTACAAGCCCCATCACTTCAACAATAACATGATGGGTCTGGGCCTTGGTGGAGgcctaaataataacaacaacccTTCACCCTGCTCCCAGGTCCAGACACCCATCTCTTGCACGCAGGTGCCAGTCTCTGCAGGAAGTACATCATGCTCCATACCTTCTCCAATGCCTCTGCCAACCCTTGGCATCCACGGGTCACTGAAAGGCCTGATGGGTAAAGGGCAGAACCCACAGATTGAGCCATTGCTCTTCAAGAGTGGCTCCAAGGAGAATGTCCAAGAAACCCAGATCTGAAGTTGAGAAAGTGAGGAAGGGAGAGGGGGAGAAAGTTAAATGTGCATATAAGAAATGGAGAAAGAATATCAGGGAGACAGAAACAGATGAAGGGTATTGGCTGTTCAACCCCTATGGGTATGTTCTCAGGAGTAATGAGAAAGGCAGACCCAGCATTGTATGAAATATTACCTACACAAGAATACAGCTGTGAAATCACTACAAAGTACATATGCTGGCAAAGAGTGGGAGTATTTCTAGAAGGAACACAGGCAACCAAACCAGAGTTTAAAATCAGTCTTGCCATACTCTGCCCCGCACGCATCAAGGGGGATCATCAAACATCAGCAAACAAAACTACACCTGCCAACAAAATATAAATCGATAGTTTTTTTCGTGCAATGCAAGATTGATAATTACGTGCCAAAACTGCACCAATCTGTGCCAAAGCAAAATCTTTGCACATCAGCATCACTACGCATATGTACAGACATATTTCAGAAGATGAAAAGACCTGTGTgtacatcacatcacatacagaaCTCCACCAATAAGGCAGAGATGCTACTAAAATGAAAATCATATGCACCATTAGGTAGGAAGTGTATATAGAAATACATGGAAACCTTAGGTATATGGACAGTGGTTGAGAACGGAAGACCACTTGTGCAGATGGTTTAGAGAAACTCCGATAACAAAATGCATCATTACGATTTTGTAGTACTATGATGGAAAGATGGATTAGTAGACCAGCACTGTGTAGAGGGCTTGTGTTTCAAGATGATGACGGACACAGTCTCTCCCCTTTCTCCAAGGCTTTCACGGTGGAGGGGAagagaggaaaaacaaacaagaacCTAAAGCGCAAAAAGACAAGTGAAAgttatacaaattttaaaagaatatataaacTATGAAAGTATacatgatatataaatatattttcattcagagaaataaattatgaagaatatttgcatttttttctgacTGAAAGCCACGGCTTTTGAAGAATTAGCAGCTGCTGCTGTAGCTCTGTCATTGAAAACTCCTTTCTctccataaaaacaaaaatgcgcCTGAAACTGGTACGTCCTCATGGGACTTAAGGGCATCCTGAGGAGACTGAGGGACAGGGATGGATTTGtggaaaatatgtttaatttcagATCATTTGGCTTTGTTTTATAAGTGTTACAAGGTTCCCCTTTTCTATACCTAACAGGGTAAATGAGGAGAGGTTACTTTAATTTgcattatatatacacaatactGTCTAAATCCACTGGCCTATAGGATCCAAATTGGGTCGATTGGTTATCACCATTATCAACAGAAGACAATAATGATGATACTATGTAATGCaatgaagggaaaaaaacactgtaaaagttGATCTACATGCTGCTATTCTGAGAAAGAGTATTTTAGTGGGACATTTTTATTGAAATCAGAGTAAAAAGAGGCTCTTGTTGACATTACATTACCTCTGCTATCATCATTATTGACAAAACATCAAGTGTCAAAAGCATAGCGGATTTGGTGTGTTTCTTTGTTTTACCTAGAGGTGATGTTTGTTTTCATTGTGTAAAAATGATTGTCACTACTGCTAATAATCCCCTCAGAAAAGCTGGAATAACAGTGGACGTACTGACAACGACTTGCTTGAAGCACTATGAAGCCACAACAACTCCAAACACGGAAATAGATGGGCCTTAAAATGGCCCCCTAAATGGCCTGTCCCCTGTTTTGTACAAGACGAAACTTTACCAGGACCCTGCTTTTTTGCCATTGTGATTTAACAAGATTCAGAACAGAACACAAACTCTGGTGAATACTGCAGGGGTAAAATGGATTATTGCGAACACTTTGTCCAGACATGTGGACGAAACTACTGTTTGAGAAAAGCGAACAGAGGACCTTTTGAAAGGTAAGAGAAAACCCACTCAGTGAGCAAGATTGGAGTTTGgaaagcttttttaaaaaaacgaaaatggacaaataaatgaaACTATAGAAACTT
>TCONS_00051518
ATGCGCATCACCACGGTGACCAGCCTTCCTAGTCCCTCCCCCCTCCTCCTCTTATTGGTCCAGCTGCTGTTGCGGCTCCTCCTCCCAGGTCAAGAGGCAGTGGGGGCCGCCTCCACCTGTCCTGCGGTGTGCAGCTGTTCCAATCAAGCTAGTCGAGTGATTTGCGCAAGACAACACTTAGAAGAGGTGCCCGACAATATATCGAACAACACACGATACCTCAACCTACAGGAGAACACCATACAGGTGATAAAATCAGACACATTCAAGCATTTGCGGCATCTGGAGATCCTCCAGCTCTCCAAGAACCAGATTCGACAGATAGAGGTTGGTGCATTCAATGGCCTTCCAAACCTCAACACTCTGGAACTGTTTGACAACCGCCTCACGCTGGTGCCATCGCAAGCTTTTGAGTACCTTAGCAAGCTGCGGGAACTGTGGTTACGAAACAATCCCATCGAGACCTTACCAGGCTACGCATTTCACCGCGTTCCCTCGCTGCGGCGTCTTGACCTCGGAGAACTCAAGAAGCTGGATTATATATCTGACGCAGCCTTTGTTGGACTCATCAATCTGCGCTACCTGAACTTGGGTATGTGTGGCCTGAAGGACATCCCTAACTTGACTCCCCTGGTGCGACTGGAGGAGCTAGAGTTGTCTGGGAACAGACTGGAAATCATCAGACCAGGATCTTTCCAAGGCCTGGAATCTTTGCGCAAGCTATGGCTCATGCACTCTCAGATGTCAGTCATTGAGCGTAATGCTTTCGATGATCTCAAGAATCTTGAGGAGCTCAACTTATCTCACAATTCCCTGCACTCTTTGCCCCATGACCTTTTCACTCCACTTCAAAAGCTGGAGCGAGTGCACCTTAACCACAACCCATGGGTTTGCAACTGCGATGTGCTGTGGCTAAGCTGGTGGCTAAAAGAAACTGTGCCGAGCAACACAACTTGTTGTGCACGATGCCATGCACCCCCCTACCTGAAGGGAAAATACATTGGGGAATTGGACCAGAGCCATTTCACTTGCTATGCCCCTGTCATTGTGGAGCCACCCACCGACCTCAATGTAACGGAGGGCATGGCTGCCGAGCTCAAGTGTCGCACTGGTACGTCTATGACCTCTGTGAATTGGATCACACCAAATGGCACCCTAATGACCCATGGCTCCTATCGTGTCAGGATTTCAGTGCTGCATGATGGCACATTGAATTTCACCAATGTTACACTGCGTGACACTGGACAATACACCTGCATGGTGACCAACTCAGCTGGGAACACTACGGCAACTGCTGTCCTGAATGTGACCGCAGCAGACGTTAGTGTCAACTACACCTACTTCACCACAGTCACAGTAGAAACAGTGGAGACTACAGGAGAGGAAGATTCTGCCTTGCGTACCTTTAACGAGACTTTCATCCATATTCCTGGTCCGACCCCTTCTGGGCATCTCTGGCATGAAGTTGTTCCCACAACTGCCTCTTCTCTCTCAATCTTTGGCTCATCGTCTTCTCCTCGAGCAACCAAACCCACATTCACAGTCCCCATTTCTGAGCCCAGTTACCCCTCTGGACTGGATGACGTGATGAAAACGACCAAGATCATCATTGGTTGTTTTGTGGCCATTACCTTCATGGCTGCTGTCATGTTGGTGGTGTTCTACAAGCTGAGAAAGCAGCACCAGTTGCACAAACATCATGGGCCGGCACGAGCCATTGAAATCATTAATGTTGAAGATGAGATTGGAGCTGGAACGGGCCTGCGTGGCGGACAGAGTTTGCGGCTGCACCATCCTGAAATTCCCCATCACTTCAACAATAACATGATGGTCTCTGCAGGAAGTACATCATGCCTGATGGGTAAAGGGCAGAACCCACAGATTGAGCCATTGCTCTTCAAGAGTGGCTCCAAGGAGAATGTCCAAGAAACCCAGATCTGA

Function

symbol description
lrrc4ba Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRC4B (leucine rich repeat containing 4B).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-25 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRC4B (leucine rich repeat containing 4B).

Ensembl:

ensembl_id ENSDARG00000004597

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051516 False 1875 mRNA 0.49 8 30369765 30388525
TCONS_00051517 False 4528 mRNA 0.45 3 30370708 30434016
TCONS_00051518 True 1941 mRNA 0.51 6 30372710 30384353

Neighbor

gene id symbol gene type direction distance location
XLOC_026434 emc10 coding downstream 121464 30241237 ~ 30248301 (-)
XLOC_026433 zgc:195001 coding downstream 151261 30202863 ~ 30218504 (-)
XLOC_026432 NA coding downstream 167934 30199036 ~ 30201831 (-)
XLOC_026431 tbc1d17 coding downstream 183467 30166946 ~ 30186298 (-)
XLOC_026430 ccndx coding downstream 211370 30153966 ~ 30158395 (-)
XLOC_026436 med25 coding upstream 20337 30454353 ~ 30488100 (-)
XLOC_026437 syt3 coding upstream 81349 30515365 ~ 30625219 (-)
XLOC_026438 si:ch211-51c14.1 coding upstream 231179 30665195 ~ 30685401 (-)
XLOC_026439 NA coding upstream 260861 30694877 ~ 30696290 (-)
XLOC_026440 shank1 coding upstream 280095 30714111 ~ 30861177 (-)
XLOC_026427 NA non-coding downstream 330616 30036697 ~ 30039149 (-)
XLOC_026426 NA non-coding downstream 346280 30019836 ~ 30023485 (-)
XLOC_026425 NA non-coding downstream 364836 29994895 ~ 30004929 (-)
XLOC_026418 NA non-coding downstream 501033 29868635 ~ 29868732 (-)
XLOC_026441 BX682556.2 non-coding upstream 366525 30800541 ~ 30800658 (-)
XLOC_026446 NA non-coding upstream 607936 31041952 ~ 31058290 (-)
XLOC_026450 NA non-coding upstream 659196 31093212 ~ 31093764 (-)
XLOC_026453 NA non-coding upstream 740117 31174133 ~ 31177209 (-)

Expression


Co-expression Network