XLOC_026437 (syt3)


Basic Information

Item Value
gene id XLOC_026437
gene name syt3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30515365 ~ 30625219 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051522
ctctctctctctcacacacacacacacacacacacacacaccaatacatcAGTATGTGTTTAGCACTGCACGCGCGCTGGAGCCCGTGAGCGGCGACGAGGTTCGTTTAGTATTCCGTGCACAAGGCGAAGGAGGGAGAAGGGAGGGAGGGCAGAGAGtgaaatagagagaaaaaaaacgagGCTGTGAAGACAGGCGAAAACACAGAAAGAGAAGAGGAAGAGGGGAGCGGAGAGACACCTCCTCTGTCCCTCTCGGTCTACCCTTTGGCATCCGTCTGTCCCAGGCTGTTTCAAAGCTTCTGTAGAACATTCCAGAAATACAGCCATGGACCACAGCGAACATTAAGTGAACTTGAATGGAAAAAAACAAAGTGGAATTACACCATACGTCACAGACTCAACCCTGCCCTGATGCTGCTTTAAGGACTGAGCTTGCAAACACTTCCTCTTCCCTGACTGATGATTTAACTCAGAGTAATAGCCCAGGAAATCTAGGCTATGCTTTCTGAACAACAGACCTAAATATAGTCGTGCTGTTTATCCATTGAAGAAAATTCCAAACGTTTCTGTGAATCAAATCCAGTTTGACCTTCTTCACCATGACGAGGACTCAGGGATGTCATTGTCATCCTTTATAACAAGAGCCGATGTTATTACTGAAAAGAGCGGTTGTGGCTCGCTTACCGATGGGTTTAACAAACATTAAAGCTTTCAATTAACGGTCATAAAGAGACCGTCTCTTGCTGAAAAGTTGTCCTTCAGAATCCACGTCTGATCGGGAACCTACGGTAGAAAGTGGCCAGACACACACTCTCTCCCCTCGGGCGCCGTCCTATTGGTGTGGACGGTGAGGGCTGCGGCGTGATTGGTTGAGTGCAGGCTGGTGTGCGATGCGGATTGGAGGATGTCGGGGGACTGGGATGACGACATTTGTAAGAGGGCCATGGTGCTGGTGGAGGAACTGTGCTTTCGGTCTGGAGGCCTCAGCCAGAGCGCGAGCTGCCAAGAGTTCAGCTACATGATGAGAGGACCTAACAGACAGATAAACACAGaGATCTCTGTGAGTCTGCTCTCCGTCATCGTAACTTTCTGTGGCATCGTGctgctctctgtctctctcttcgTCTCCTGGAAGCTATGCTGGTTGCCTTGGAGAGATAAGGAAGGCGGGGGTCTGAGCTTGACGTCGGGTCTCCTGCCCGGTGGTGCGGGTTTGGGTGGGGTCGGAGGCGGAGGGGGTGCCTCGCTCCTTCCTCCCCTTTTACAGAGGAAAGATACTCACTCTTCTTCCTCGTTGTATCCCACGCTGTCCCAGCAGGGTCAGCATCACCCCCATTTCTCCGACGTGATGGGGGTCGAGGGTGGAGGGGGGCTGGTGGTAGGGGGTGTGGTTGGGGGTCCGCAGGAGATGCAGGAGCACTCCTACCTGGACATGGACTCTTATCCCAACAATGCTGCAACTCTTAAGTTAAGCCAGACATCGCCCGAGTTGCCCCCGGCAACAGAAGGAGGCTCAGCTGCGAAAGACCTGCCCAATGCCCACTCCCAGCAGCAGGTCACCACCAGGCCAAAGCCCATGACTCACCAGCTCTCCAGCCCTGATTTCCATGGTGAGGAGAAGAGCGAGCAGTTGACCAGCATTGGGCAGATCAAGCCAGAACTTTACCGCCTGCGCCAAGGAGACCAGGGGGACGGCAAACAAGGCAACAACTGTGGCAAAATCAGCTTCCTCTTGCGATACGCCTTCAACACGGAGCAGCTGGTGGTTAAGATCCTGAAAGCCCTGGACCTCCCGGCGAAGGATGCCAATGGTTTCTCCGATCCCTATGTCAAGATCTACTTACTGCCTGATAGGAAGAAGAAATTTCAGACCAAGGTGCACAGAAAAACTCTCAACCCGGTCTTTAATGAGACGTTCCAGTTCGGCGTGCCCCTGGCTGAGCTGCACGCGCGCAAGCTCCACTTCTCCGTCTACGACTTTGACCGCTTTTCCAGACACGACCTCATAGGTCAAGTGGTAGTGGATAACCTGCTGGACTTCAGCGAGGGAACTGGGGAGAAGCCTATTTGGAGAGACATTGTGGAAGGAACGGCGGAGAAAGCTGACCTGGGAGAGCTGAACTTCTCACTGTGTTACCTGCCAACAGCTGGCCGACTGACCGTCACCATCATTAAGGCCACCAATCTGAAAGCCATGGACCTGACGGGCTTCTCAGATCCATACGTAAAGGCATCTTTGGTTTGTGAAGGTCGAAGGCTGAAAAAGAGAAAGACATCCATAAAGAAGAATACCCTCAATCCCACGTATAACGAGGCTCTGGTCTTTGATATTCCCAACGAGAACATTGAGAGTGTGTCGCTCATCATAGCCGTCATGGACTACGACTGtATCGGTCATAATGAGGTGATCGGGATGTGCCGTATGGGCAGTGATGCTGATGGGCCGGGAAGAGAGCACTGGACAGCCATGCTGGCGAATCCCCGCAAGCCTATTGAACACTGGCACCAGCTGGTGGAGGAAAAATCCATAAACACTTATGTGTCAAAGAGTGCCGCACCCTCCCCCAAGCCAAACATAGTGGTGGACAGCCCTCACTCTGAGTAGAGatGTCAGCATTATCTTTTTAGCGACGGGAATACATTCTTTCTTTTCACCTGTGAATAATTGTTCATCAAGAAAGAAGCAGAGAAGAGAGACTGTGCTTGTGTTAGTGCTATTCCTCTAAATCAACCCTGCAGACCCAACACAATATatagaaaagaaaacaacaacacctAGACTAGACCGGACACAaagcacacacagatacacactcaAACAGACAAAGAACACACACCAGACTCATAACAAAACAACTGGCATGGATGGTTTTGCTTCAGGAATGATGTTAAAGTCAAAATATGTCATGATTTATTCAGGGGAAATATGACAAACATTCCCACTTTAAATAGATAatctttatttagttatttgaaaCTGAGCCtacaaaaaaaagagattttaattac
>TCONS_00051525
ATGTCGGGGGACTGGGATGACGACATTTGTAAGAGGGCCATGGTGCTGGTGGAGGAACTGTGCTTTCGGTCTGGAGGCCTCAGCCAGAGCGCGAGCTGCCAAGAGTTCAGCTACATGATGAGAGGACCTAACAGACAGATAAACACAGaGATCTCTGTGAGTCTGCTCTCCGTCATCGTAACTTTCTGTGGCATCGTGctgctctctgtctctctcttcgTCTCCTGGAAGCTATGCTGGTTGCCTTGGAGAGATAAGGAAGGGGGTGCCTCGCTCCTTCCTCCCCTTTTACAGAGGAAAGATACTCACTCTTCTTCCTCGTTGTATCCCACGCTGTCCCAGCAGGGTCAGCATCACCCCCATTTCTCCGACGTGATGGGGGTCGAGGGGGGTGTGGTTGGGGGTCCGCAGGAGATGCAGGAGCACTCCTACCTGGACATGGACTCTTATCCCAACAATGCTGGTAAGCAGATCTCTTTAAGCCAGACATCGCCCGAGTTGCCCCCGGCAACAGAAGGAGGCTCAGCTGCGAAAGACCTGCCCAATGCCCACTCCCAGCAGCAGGTCACCACCAGATTCAACAACCAGACAGAAGTGCCAAAGCCCATGACTCACCAGCTCTCCAGCCCTGATTTCCATGGTGAGGAGAAGAGCGAGCAGTTGACCAGCATTGGGCAGATCAAGCCAGAACTTTACCGCCTGCGCCAAGGAGACCAGGGGGACGGCAAACAAGGCAACAACTGTGGCAAAATCAGCTTCCTCTTGCGATACGCCTTCAACACGGAGCAGCTGGTGGTTAAGATCCTGAAAGCCCTGGACCTCCCGGCGAAGGATGCCAATGGTTTCTCCGATCCCTATGTCAAGATCTACTTACTGCCTGATAGGAAGAAGAAATTTCAGACCAAGGTGCACAGAAAAACTCTCAACCCGGTCTTTAATGAGACGTTCCAGTTCGGCGTGCCCCTGGCTGAGCTGCACGCGCGCAAGCTCCACTTCTCCGTCTACGACTTTGACCGCTTTTCCAGACACGACCTCATAGGTCAAGTGGTAGTGGATAACCTGCTGGACTTCAGCGAGGGAACTGGGGAGAAGCCTATTTGGAGAGACATTGTGGAAGGAACGGCGGAGAAAGCTGACCTGGGAGAGCTGAACTTCTCACTGTGTTACCTGCCAACAGCTGGCCGACTGACCGTCACCATCATTAAGGCCACCAATCTGAAAGCCATGGACCTGACGGGCTTCTCAGATCCATACGTAAAGGCATCTTTGGTTTGTGAAGGTCGAAGGCTGAAAAAGAGAAAGACATCCATAAAGAAGAATACCCTCAATCCCACGTATAACGAGGCTCTGGTCTTTGATATTCCCAACGAGAACATTGAGAGTGTGTCGCTCATCATAGCCGTCATGGACTACGACTGtATCGGTCATAATGAGGTGATCGGGATGTGCCGTATGGGCAGTGATGCTGATGGGCCGGGAAGAGAGCACTGGACAGCCATGCTGGCGAATCCCCGCAAGCCTATTGAACACTGGCACCAGCTGGTGGAGGTATAA
>TCONS_00051524
ATGTCGGGGGACTGGGATGACGACATTTGTAAGAGGGCCATGGTGCTGGTGGAGGAACTGTGCTTTCGccgtgctttcccgggctgcttcggccgtgggttggagatggtttatcccccaATCTCTGTGAGTCTGCTCTCCGTCATCGTAACTTTCTGTGGCATCGTGctgctctctgtctctctcttcgTCTCCTGGAAGCTATGCTGGTTGCCTTGGAGAGATAAGGAAGGCGGGGGTCTGAGCTTGACGTCGGGTCTCCTGCCCGGTGGTGCGGGTTTGGGTGGGGTCGGAGGCGGAGGGGGTGGTCAGCATCACCCCCATTTCTCCGACGTGATGGGGGTCGAGGGTGGAGGGGGGCTGGAGATGCAGGAGCACTCCTACCTGGACATGGACTCTTATCCCAACAATGCTGCAACTCTTAAGTTAAGCCAGACATCGCCCGAGTTGCCCCCGGCAACAGAAGGAGGCTCAGCTGCGAAAGACCTGCCCAATGCCCACTCCCAGCAGCAGacattagaaacaaacagatggccaaccaaaaaGCCAAAGCCCATGACTCACCAGCTCTCCAGCCCTGATTTCCATGGTGAGGAGAAGAGCGAGCAGTTGACCAGCATTGGGCAGATCAAGCCAGAACTTTACCGCCTGCGCCAAGGAGACCAGGGGGACGGCAAACAAGGCAACAACTGTGGCAAAATCAGCTTCCTCTTGCGATACGCCTTCAACACGGAGCAGCTGGTGGTTAAGATCCTGAAAGCCCTGGACCTCCCGGCGAAGGATGCCAATGGTTTCTCCGATCCCTATGTCAAGATCTACTTACTGCCTGATAGGAAGAAGAAATTTCAGACCAAGGTGCACAGAAAAACTCTCAACCCGGTCTTTAATGAGACGTTCCAGTTCGGCGTGCCCCTGGCTGAGCTGCACGCGCGCAAGCTCCACTTCTCCGTCTACGACTTTGACCGCTTTTCCAGACACGACCTCATAGGTCAAGTGGTAGTGGATAACCTGCTGGACTTCAGCGAGGGAACTGGGGAGAAGCCTATTTGGAGAGACATTGTGGAAGGAACGGCGGAGAAAGCTGACCTGGGAGAGCTGAACTTCTCACTGTGTTACCTGCCAACAGCTGGCCGACTGACCGTCACCATCATTAAGGCCACCAATCTGAAAGCCATGGACCTGACGGGCTTCTCAGATCCATACGTAAAGGCATCTTTGGTTTGTGAAGGTCGAAGGCTGAAAAAGAGAAAGACATCCATAAAGAAGAATACCCTCAATCCCACGTATAACGAGGCTCTGGTCTTTGATATTCCCAACGAGAACATTGAGAGTGTGTCGCTCATCATAGCCGTCATGGACTACGACTGtATCGGTCATAATGAGGTGATCGGGATGTGCCGTATGGGCAGTGATGCTGATGGGCCGGGAAGAGAGCACTGGACAGCCATGCTGGCGAATCCCCGCAAGCCTATTGAACACTGGCACCAGCTGGTGGAGGTATAA
>TCONS_00051523
ATGTCGGGGGACTGGGATGACGACATTTGTAAGAGGGCCATGGTGCTGGTGGAGGAACTGTGCTTTCGGTCTGGAGGCCTCAGCCAGAGCGCGAGCTGCCAAGAGTTCAGCTACATGATGAGAGGACCTAACAGACAGATAAACACAGaGATCTCTGTGAGTCTGCTCTCCGTCATCGTAACTTTCTGTGGCATCGTGctgctctctgtctctctcttcgTCTCCTGGAAGCTATGCTGGTTGCCTTGGAGAGATAAGGAAGGGGGTGCCTCGCTCCTTCCTCCCCTTTTACAGAGGAAAGATACTCACTCTTCTTCCTCGTTGTATCCCACGCTGTCCCAGCAGGGTCAGCATCACCCCCATTTCTCCGACGTGATGGGGGTCGAGGGGGGTGTGGTTGGGGGTCCGCAGGAGATGCAGGAGCACTCCTACCTGGACATGGACTCTTATCCCAACAATGCTGCAACTCTTAAGTTAAGCCAGACATCGCCCGAGTTGCCCCCGGCAACAGAAGGAGGCTCAGCTGCGAAAGACCTGCCCAATGCCCACTCCCAGCAGCAGGTCACCACCAGGTCACCCATGACTCACCAGCTCTCCAGCCCTGATTTCCATGGTGAGGAGAAGAGCGAGCAGTTGACCAGCATTGGGCAGATCAAGCCAGAACTTTACCGCCTGCGCCAAGGAGACCAGGGGGACGGCAAACAAGGCAACAACTGTGGCAAAATCAGCTTCCTCTTGCGATACGCCTTCAACACGGAGCAGCTGGTGGTTAAGATCCTGAAAGCCCTGGACCTCCCGGCGAAGGATGCCAATGGTTTCTCCGATCCCTATGTCAAGATCTACTTACTGCCTGATAGGAAGAAGAAATTTCAGACCAAGGTGCACAGAAAAACTCTCAACCCGGTCTTTAATGAGACGTTCCAGTTCGGCGTGCCCCTGGCTGAGCTGCACGCGCGCAAGCTCCACTTCTCCGTCTACGACTTTGACCGCTTTTCCAGACACGACCTCATAGGTCAAGTGGTAGTGGATAACCTGCTGGACTTCAGCGAGGGAACTGGGGAGAAGCCTATTTGGAGAGACATTGTGGAAGGAACGGCGGAGAAAGCTGACCTGGGAGAGCTGAACTTCTCACTGTGTTACCTGCCAACAGCTGGCCGACTGACCGTCACCATCATTAAGGCCACCAATCTGAAAGCCATGGACCTGACGGGCTTCTCAGATCCATACGTAAAGGCATCTTTGGTTTGTGAAGGTCGAAGGCTGAAAAAGAGAAAGACATCCATAAAGAAGAATACCCTCAATCCCACGTATAACGAGGCTCTGGTCTTTGATATTCCCAACGAGAACATTGAGAGTGTGTCGCTCATCATAGCCGTCATGGACTACGACTGtATCGGTCATAATGAGGTGATCGGGATGTGCCGTATGGGCAGTGATGCTGATGGGCCGGGAAGAGAGCACTGGACAGCCATGCTGGCGAATCCCCGCAAGCCTATTGAACACTGGCACCAGCTGGTGGAGGTATAA

Function

symbol description
syt3 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT3 (synaptotagmin 3).

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0014059 regulation of dopamine secretion biological_process
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090601-1 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT3 (synaptotagmin 3).

Ensembl:

ensembl_id ENSDARG00000075830

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051522 False 3011 mRNA 0.50 13 30515365 30625219
TCONS_00051525 False 1554 mRNA 0.54 12 30529627 30609659
TCONS_00051524 False 1503 mRNA 0.54 13 30529627 30609659
TCONS_00051523 True 1527 mRNA 0.54 11 30529627 30609659

Neighbor

gene id symbol gene type direction distance location
XLOC_026436 med25 coding downstream 27265 30454353 ~ 30488100 (-)
XLOC_026435 lrrc4ba coding downstream 81349 30369765 ~ 30434016 (-)
XLOC_026434 emc10 coding downstream 267064 30241237 ~ 30248301 (-)
XLOC_026433 zgc:195001 coding downstream 296861 30202863 ~ 30218504 (-)
XLOC_026432 NA coding downstream 313534 30199036 ~ 30201831 (-)
XLOC_026438 si:ch211-51c14.1 coding upstream 39976 30665195 ~ 30685401 (-)
XLOC_026439 NA coding upstream 69658 30694877 ~ 30696290 (-)
XLOC_026440 shank1 coding upstream 88892 30714111 ~ 30861177 (-)
XLOC_026441 BX682556.2 coding upstream 175322 30800541 ~ 30800658 (-)
XLOC_026442 kmt5c coding upstream 243107 30868326 ~ 30909487 (-)
XLOC_026427 NA non-coding downstream 476216 30036697 ~ 30039149 (-)
XLOC_026426 NA non-coding downstream 491880 30019836 ~ 30023485 (-)
XLOC_026425 NA non-coding downstream 510436 29994895 ~ 30004929 (-)
XLOC_026418 NA non-coding downstream 646633 29868635 ~ 29868732 (-)
XLOC_026446 NA non-coding upstream 416733 31041952 ~ 31058290 (-)
XLOC_026450 NA non-coding upstream 467993 31093212 ~ 31093764 (-)
XLOC_026453 NA non-coding upstream 548914 31174133 ~ 31177209 (-)

Expression


Co-expression Network