XLOC_026438 (si:ch211-51c14.1)


Basic Information

Item Value
gene id XLOC_026438
gene name si:ch211-51c14.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30665195 ~ 30685401 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051526
gagagggaggagtGTTGTCATGTAGTACGATCCGCAGAGCGAAACGCCTGGTTATCTGCAGCTGCTTCAGAAAGAGGGGGATCTGGAAAGAGGGAGGAGAGGAGAGAAAGAAAGTGACAGGAAGCCACCTCATTAAACACTGACAGTGGGTCAAAGACAGAGAGGAGAGGAGAACGAAGCTGTCCAGAACACACCATAACCATATGGTGGTCTTAAAGCGGTAGAGACAGCAGAAAAAAGTGGTGATCTGGTACATCGCAAAAGTAAAGGGAAAACCGAAAGGAAAATTTCTCTGGAAAAGTTGGAGACTCCATCATGTCAACGCTTCCGGCAGAGTCGGGCCCTGAGGATGCCAATAATCAAAGCTTCTGGATGCCAGGGAACTACCACCAGACAGTCAAGAGGACTGAAGACTCCTTCCAGGCATGTAATGATATAGTGGCGTGTTTCCAGGAGAGGGCCAGGGTCGAGAGACAGTACGCACAGCAGCTTAGCGAGTGGAGTGCCAAGTGGAAACCCCTAGTGGATGCCAGTCCTCTCTATGGCTCTCTTCTGCGAGCTTGGCAGTGCTTCCTCTCTTCCGCTGACCGCCTCTCCTCACTGCACTCCTCCATCTGCCGTGCTCTCGTGTCCGAAGATGGAGATCGCATTCGGACCTGGCAGAAGGAGACTTTCCATAAGAAGATATTTGGAGGTTTTAAGGAATCTCAGGATTTTGAAACCGGTTTCTCGCGTGCCCAGAAACCCTGGGCCAAGAGACTGAAAAAGCTTGAGAAGGCCAGGTCAGCCTTCCACAAAGCCTGCCGTAAAGAACACATGGCTCGCGAGAGGGAAACTCATGCTCAAGGAAACCCTGACATTGCCATTGAGAAACAGAGAAAGATCCAGGAAGAGACCGAACTGGCTCACCAGGAGACAGAGAAAGTGCGAGCCCGCTATGAGAAGGTCCTTGAGGAAGTGACACGTTATGCTCCACGCTACATGGAGGAAATGGAGTCTATCTTTGACCAATCacaagaggaggagaggaagagaATAAGCTTTCTCAAACAGGCTTTTCTCTCCATCCACAGGCACTTGGATGTCACCAACAATGAAAGTGTGAAAGCTGTGTACAATGAGCTCCACGACACTCTGATGTCTATCAGCGAGCAGGAGGATTTGCGTTGGTGGAAGAACACACATGGGCCAGGCATGCCCACTGACTGGCCTCAATTTCAGGAGTGGACTCCAGACAAGAAGcataaaaaaggaaagaaggaGGTGGAGCAGAAAGCAGCAGTGATGGAGAGAAGTGTAATGATTGGAGGAGTGAGAGTCCGAGCTCTTTATGACTATGTTGGACAGGAGACGGATGAACTCTCCTTCAAAGCAGGTGAGGAGTTTCTGAAGATCGAGGATGAGGATGATCAGGGCTGGTGCAGAGGCATGATGGATGGAGGAAAGGAGGGTCTTTATCCAGCTAACTATGTGGAGGCAGTGTAAAACCACAGCTCTTGGGTCTGTAAATGTCCACAGGCGACCAGATTCAAGACTGTTTTACAACCGTTTTCATTCAAGTTTGCTTGTTTTCTTTGAGCGGATGGTACACAGGTATGGGTTTAGAACTCAACAAAAGTTAACTCAAATGGTTCCCAACCAGTatgagatgttttgaagaatctTGGTAGCCatactcattgacttccatagtaggaaaacagaTACTATGGAATTAAATGTGTATCATCTTAAggatttcttcttttgtgttcagcagaagaaagtaaTAAGTGGaagattttactttttttgggTGAATGATAAGTGATAATGAACTGATAAGTGCATAAGTTGGGATCAGAGAAAATGTTTCCAAAGCTCCGTAACTACGATCTTACTTGAGAACAatgtaattgtacattttattatgtGTCACTCTGTGGCTTTTAATCAAAATGCAGAGATTTTCATATGTTATGATATGAATAGATTCTGAGATTGtgtaatatatacatatagagAGAATATGAACTGCATTGTCTTGATGTACAGAATGGTTGAAGTCCAAAAGAACAGCCTTCCTGtgacaattttaatattttaaaaattgatacACTATTTAAccaaaagtccctttaaggcaagtcatttcactcggcggccttCTTTGAGACTTATCactcgggcagtatgcttgggcattctgtctgaatggggaaacatcaaattctccaaaactgcttgtcAAGCTTATACGATTGAATTTCATAtcaggaatcaccaataaaattaaacaacaactgtc
>TCONS_00051527
CCTACAGAAAATACCTCACTCTTGACCTCTTAAACAGCCTATAAACCTTTAGCGCCAAGTGCtagcttttcattttcttttccctcTGTATTTTACAATTAACCTTAGCGTTTTATCCATGTTCTTTCTGTCTGCTTCTCAGCCAGGGAACTACCACCAGACAGTCAAGAGGACTGAAGACTCCTTCCAGGCATGTAATGATATAGTGGCGTGTTTCCAGGAGAGGGCCAGGGTCGAGAGACAGTACGCACAGCAGCTTAGCGAGTGGAGTGCCAAGTGGAAACCCCTAGTGGATGCCAGTCCTCTCTATGGCTCTCTTCTGCGAGCTTGGCAGTGCTTCCTCTCTTCCGCTGACCGCCTCTCCTCACTGCACTCCTCCATCTGCCGTGCTCTCGTGTCCGAAGATGGAGATCGCATTCGGACCTGGCAGAAGGAGACTTTCCATAAGAAGATATTTGGAGGTTTTAAGGAATCTCAGGATTTTGAAACCGGTTTCTCGCGTGCCCAGAAACCCTGGGCCAAGAGACTGAAAAAGCTTGAGAAGGCCAGGTCAGCCTTCCACAAAGCCTGCCGTAAAGAACACATGGCTCGCGAGAGGGAAACTCATGCTCAAGGAAACCCTGACATTGCCATTGAGAAACAGAGAAAGATCCAGGAAGAGACCGAACTGGCTCACCAGGAGACAGAGAAAGTGCGAGCCCGCTATGAGAAGGTCCTTGAGGAAGTGACACGTTATGCTCCACGCTACATGGAGGAAATGGAGTCTATCTTTGACCAATCacaagaggaggagaggaagagaATAAGCTTTCTCAAACAGGCTTTTCTCTCCATCCACAGGCACTTGGATGTCACCAACAATGAAAGTGTGAAAGCTGTGTACAATGAGCTCCACGACACTCTGATGTCTATCAGC

Function

symbol description
si:ch211-51c14.1 Predicted to enable phospholipid binding activity. Predicted to be involved in cytoskeleton organization; plasma membrane tubulation; and regulation of endocytosis. Predicted to be active in endosome and plasma membrane.

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0097320 plasma membrane tubulation biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0005768 endosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005543 phospholipid binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-48 Predicted to enable phospholipid binding activity. Predicted to be involved in cytoskeleton organization; plasma membrane tubulation; and regulation of endocytosis. Predicted to be active in endosome and plasma membrane.

Ensembl:

ensembl_id ENSDARG00000054645

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051526 False 2287 mRNA 0.45 10 30665195 30685401
TCONS_00051527 True 916 lncRNA 0.49 5 30670505 30676028

Neighbor

gene id symbol gene type direction distance location
XLOC_026437 syt3 coding downstream 39976 30515365 ~ 30625219 (-)
XLOC_026436 med25 coding downstream 177095 30454353 ~ 30488100 (-)
XLOC_026435 lrrc4ba coding downstream 231179 30369765 ~ 30434016 (-)
XLOC_026434 emc10 coding downstream 416894 30241237 ~ 30248301 (-)
XLOC_026433 zgc:195001 coding downstream 446691 30202863 ~ 30218504 (-)
XLOC_026439 NA coding upstream 9476 30694877 ~ 30696290 (-)
XLOC_026440 shank1 coding upstream 28710 30714111 ~ 30861177 (-)
XLOC_026441 BX682556.2 coding upstream 115140 30800541 ~ 30800658 (-)
XLOC_026442 kmt5c coding upstream 182925 30868326 ~ 30909487 (-)
XLOC_026443 coro1a coding upstream 240963 30926364 ~ 30941362 (-)
XLOC_026432 NA non-coding downstream 463364 30199036 ~ 30201831 (-)
XLOC_026427 NA non-coding downstream 626046 30036697 ~ 30039149 (-)
XLOC_026426 NA non-coding downstream 641710 30019836 ~ 30023485 (-)
XLOC_026425 NA non-coding downstream 660266 29994895 ~ 30004929 (-)
XLOC_026418 NA non-coding downstream 796463 29868635 ~ 29868732 (-)
XLOC_026446 NA non-coding upstream 356551 31041952 ~ 31058290 (-)
XLOC_026450 NA non-coding upstream 407811 31093212 ~ 31093764 (-)
XLOC_026453 NA non-coding upstream 488732 31174133 ~ 31177209 (-)

Expression


Co-expression Network