XLOC_026439


Basic Information

Item Value
gene id XLOC_026439
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30694877 ~ 30696290 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053050
TAATTTATGTATACTAGTAAATTTTCCATTAAGTACTAATGcttattagATACTAGTGCTTACACAAACAcgaattccttttttttttttttttgagatttaagataTTTACTATTTAGTTGACTAGTAGTATGTATTCTAGTTGGGACTAGTACATATTTTATGTACTGGTAGTTAGTATATAAAAACAGTACATGGGTAGCAGTTTCTAATAAAGTGTCTAATAAGTAAGCActagtgtatttaaaaaaaaaaaaaaaaaagcactactGTCTAATAAGCATTGTTACTTAATGGAAAGGGTACTAGTAACATGAATATATATACACTAGTATGGATTATAAATTGTGAACACTTCTTGCCATACTAGTTTTTTTGCTTTTATCTAATGCCCAGTTACTGTTATTTACaacttaataaaaaacaaataataaattcattcCTCCCTTTTTAACACCAGTTAGAAAATGCCAGATTGGGGTAAGTTTGTTGGAGAGACTCCAACGTTACGACAACGATAATTGTTAAATGCTGGAACTGAACTCCAGCATTGATTGATTTCTCAAAGTACTTTTTCCCCTAATCGCAGTAGCCTCATTTTTAACATCAGTGGAAGTGCAGCCATTCAAGATCGTCTTCGTCAGTCAAACTGTTTCACTATGCAGATTTTTATGCAAAGGGGCATGCTTATTCCACAGATGGTTCAACCCAAAAAATAAATTGGTCAAACTGGTCAGTTTGTTAAACCAAGATATTGAAGAATGTTAATAAATCATAAGTGGTTCAAAAGTTACATTTGCTTAACGTTGCAGGAAATAAAATTCCCTTTACCATTTTAACCTCATTCAACTactgatttaaataaatttaaacggTCCACACTTATAAAACAATTCCTAAATATGAGTTAATACAAAATTTAAATCCCAGACTTTGTTCACAAGGAAGAAAATGTATACTGCTGGACAAGAACCACATGTACCTCAAAGGGCTCAAATCCTACATTTTCCAGTAACATGCTTTCTAGATTTTACCCCTTTAATATTAAAATGGCTTCAatctaatgttaaaaaaaaaaactaaaatatagatCTTGCAGTTTTAAAGTCTCATTTATTGGTTTTCAGAGAACAAAGGAAACTTACACAATAAAAAGaacgggcaaaaaaaaaaataataataaaataaattgcagggaagaaaaaaaaaaataaaaaaggctcaTCCACAGGTCACTCACAGCTCAGCAGACTCCCCTCTAGAAGAACAGAAAAGGCTGATTACTCGTCACGTTTAATTACTTTAATACAACTTCATATTAC

Function

GO:

id name namespace
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0098793 presynapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053050 True 1322 lncRNA 0.31 2 30694877 30696290

Neighbor

gene id symbol gene type direction distance location
XLOC_026438 si:ch211-51c14.1 coding downstream 9476 30665195 ~ 30685401 (-)
XLOC_026437 syt3 coding downstream 69658 30515365 ~ 30625219 (-)
XLOC_026436 med25 coding downstream 206777 30454353 ~ 30488100 (-)
XLOC_026435 lrrc4ba coding downstream 260861 30369765 ~ 30434016 (-)
XLOC_026434 emc10 coding downstream 446576 30241237 ~ 30248301 (-)
XLOC_026440 shank1 coding upstream 17821 30714111 ~ 30861177 (-)
XLOC_026441 BX682556.2 coding upstream 104251 30800541 ~ 30800658 (-)
XLOC_026442 kmt5c coding upstream 172036 30868326 ~ 30909487 (-)
XLOC_026443 coro1a coding upstream 230074 30926364 ~ 30941362 (-)
XLOC_026444 paqr4a coding upstream 251674 30947964 ~ 30962646 (-)
XLOC_026432 NA non-coding downstream 493046 30199036 ~ 30201831 (-)
XLOC_026427 NA non-coding downstream 655728 30036697 ~ 30039149 (-)
XLOC_026426 NA non-coding downstream 671392 30019836 ~ 30023485 (-)
XLOC_026425 NA non-coding downstream 689948 29994895 ~ 30004929 (-)
XLOC_026418 NA non-coding downstream 826145 29868635 ~ 29868732 (-)
XLOC_026446 NA non-coding upstream 345662 31041952 ~ 31058290 (-)
XLOC_026450 NA non-coding upstream 396922 31093212 ~ 31093764 (-)
XLOC_026453 NA non-coding upstream 477843 31174133 ~ 31177209 (-)
XLOC_026457 NA non-coding upstream 815180 31511470 ~ 31600282 (-)

Expression


Co-expression Network