G748895


Basic Information

Item Value
gene id G748895
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77211182 ~ 77212460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU850149
agagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagactctaccCCTTGTGCATGCCATTGGACATGCTGTGTCAGTTGCCATGGGGACTTAAGTGGGGCTAGGCCACACCCCTTGCTAATGTTGAACTGGGCTCTTATTGGTGGAGAGGTAAACAAAAAGCAACACGGTTAGTTGTTTATTGGAATCCCCATCAGAAGTCCATTCCTAAATAGTCCACTAGCTTCTACTATAGAAGGCACTTCCTGTAGATCTGAAGGGATTGGATAGGCATTAAACTATCTCCACCTTGTGCCTGGATAGGCCAAGTGGAATGTTCTCCATATTGCTTAGACCTCTGCAGTCAGTTCAGATCTACACCAGTATGTTGGTGCTAGAGGTCGATTTGGGATGTGGCTTGAATCCCCAGAATAGATCAGTTGGTTTGCCAGACTCACAGTAAACCTTGGACTAAATTGCACTTATAATCAAGATGATTTGGTTTCATGGACATGACTTCTTGAAATAGTCCTGGACTAAGGCTAAGCTTCAGTCCCAGACTGTCGGACAGAAGCTCATATTTAATATGTTCATAAAGTCACGTTTTTAGATCTTGAATCAAGAATGAAATCTACTCCTGGATTAATATAATCTGGCTGTGTGAAAGAAGTTGGTTTTAGGCAGTTTAGGTCCTCCGTGGATCCTTCCCTCTACAATGTGCTGAGTGTTAGGCCTGTTCAGGCAATGATGTCTGTTTAGCAGAACACAATGAAACCATATAAGGATCAGCTTTATTGTAAAGATTAAGGTTTCAATACTCAAATCATCTGGAGGAAATTCAATGTACATTTCATGTGTAGGAGTGACATATCTGCAATCTCAGTCTGTACAGGGGGTCAAACACACTCAATGTACTGAACTCTCACTAGGCAGTGCCCCGTCTGCACCTGTTCTCAAATGAATAAAAGACAAAACGCCTAGAAACATAATTCTCTTATT
>TU850148
agagagagagagagactctaccCCTTGTGCATGCCATTGGACATGCTGTGTCAGTTGCCATGGGGACTTAAGTGGGGCTAGGCCACACCCCTTGCTAATGTTGAACTGGGCTCTTATTGGTGGAGAGGTAAACAAAAAGCAACACGGTTAGTTGTTTATTGGAATCCCCATCAGAAGTCCATTCCTAAATAGTCCACTAGCTTCTACTATAGAAGGCACTTCCTGTAGATCTGAAGGGATTGGATAGGCATTAAACTATCTCCACCTTGTGCCTGGATAGGCCAAGTGGAATGTTCTCCATATTGCTTAGACCTCTGCAGTCAGTTCAGATCTACACCAGTATGTTGGTGCTAGAGGTCGATTTGGGATGTGGCTTGAATCCCCAGAATAGATCAGTTGGTTTGCCAGACTCACAGTAAACCTTGGACTAAATTGCACTTATAATCAAGATGATTTGGTTTCATGGACATGACTTCTTGAAATAGTCCTGGACTAAGGCTAAGCTTCAGTCCCAGACTGTCGGACAGAAGCTCATATTTAATATGTTCATAAAGTCACGTTTTTAGATCTTGAATCAAGAATGAAATCTACTCCTGGATTAATATAATCTGGCTGTGTGAAAGAAGTTGGTTTTAGGCAGTTTAGGTCCTCCGTGGATCCTTCCCTCTACAATGTGCTGAGTGTTAGGCCTGTTCAGGCAATGATGTCTGTTTAGCAGAACACAATGAAACCATATAAGGATCAGCTTTATTGTAAAGATTAAGGTTTCAATACTCAAATCATCTGGAGGAAATTCAATGTACATTTCATGTGTAGGAGTGACATATCTGCAATCTCAGTCTGTACAGGGGGTCAAACACACTCAATGTACTGAACTCTCACTAGGCAGTGCCCCGTCTGCACCTGTTCTCAAATGAATAAAAGACAAAACGCCTAGAAACATAATTCTCTTATTTCCCACTTTGCTTTGAAATTGTACCCTTCCCTTACTCTGTTTTATTGTCTATTCTACCTTCACGTTTTATATTGTAGATGGGAAATAACAGGTGAAACGTTGAGCACATGCAAAGCTTTAGCAAGTCCCACTTGGTTTCTCATGTCTCCTTGTTCATTTGTGCTACaaaaggatttttttttattttgctgCTATGTAGATGTGGCTTTTAGTTAAGATCTATCTGTATGAGCTACCTCAGGTACAGATAGTGCAGACCCGTGCGAACAGGAAC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU850149 False 1005 lncRNA 0.42 1 77211182 77212186
TU850148 True 1229 lncRNA 0.41 1 77211232 77212460

Neighbor

gene id symbol gene type direction distance location
LOC110530663 LOC105020301 coding upstream 368 77181864 ~ 77210814 (+)
slc25a12 LOC106569494 coding upstream 55618 77127486 ~ 77155564 (+)
LOC118965635 NA coding upstream 121877 77087135 ~ 77090382 (+)
LOC110530659 LOC106569500 coding upstream 164735 77019461 ~ 77046447 (+)
LOC110530656 LOC106600124 coding upstream 490654 76526810 ~ 76720528 (+)
LOC110530673 NA coding downstream 99941 77312401 ~ 77344087 (+)
LOC110530672 NA coding downstream 159727 77372187 ~ 77377386 (+)
LOC110530676 NA coding downstream 173121 77385581 ~ 77386837 (+)
LOC110530677 LOC106569510 coding downstream 250343 77462803 ~ 77467237 (+)
LOC110530678 LOC106569511 coding downstream 265887 77478347 ~ 77541551 (+)
G748919 NA non-coding upstream 29886 77180597 ~ 77181296 (+)
G748903 NA non-coding upstream 38019 77143204 ~ 77173163 (+)
G748904 NA non-coding upstream 66536 77144278 ~ 77144646 (+)
G748900 NA non-coding upstream 76743 77133769 ~ 77134439 (+)
G748890 NA non-coding upstream 100074 77110889 ~ 77111108 (+)
G748930 NA non-coding downstream 3482 77215942 ~ 77216154 (+)
G748931 NA non-coding downstream 4056 77216516 ~ 77217032 (+)
G748933 NA non-coding downstream 8611 77221071 ~ 77221307 (+)
G748935 NA non-coding downstream 9897 77222357 ~ 77222866 (+)
G748945 NA non-coding downstream 22947 77235407 ~ 77235632 (+)
G748917 NA other upstream 31054 77179344 ~ 77180128 (+)
G748905 NA other upstream 33833 77150663 ~ 77177349 (+)
G748432 NA other upstream 503538 76706730 ~ 76708278 (+)
LOC110530655 LOC106569480 other upstream 758745 76451222 ~ 76453376 (+)
G747987 cah12 other upstream 816853 76239950 ~ 76394329 (+)
G748959 LOC106569508 other downstream 54192 77266652 ~ 77272660 (+)
G749137 NA other downstream 90277 77302737 ~ 77382611 (+)
LOC110530993 LOC106569518 other downstream 671777 77863590 ~ 77887401 (+)
G749663 tcf3 other downstream 1031750 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 1584682 78797142 ~ 78797548 (+)

Expression


Co-expression Network