G748951


Basic Information

Item Value
gene id G748951
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77246201 ~ 77264007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU850210
GAAACAACAGACAGACTTTATTGTAGCTGCAACATTGCATGATTGTGAGTTAAAGTGCCTCCTGTACCTTCCTAAGGACAAACCTCCCACTACGGCTTCATACACATCCAAATTGGTCACATGATTTAGGTCATTGTGCAGTTTACTTAGCTGGTCCCTACATACCATAAAGATATATTTATAATGACATAATTCTTAACTTACTGCAATACACATCCATTTCAAATGAAATGAATTAAAAAGCATAGTAGTGTGCAAAGACACGAACTGAAGCTCTTTGATTTACCAATGAGTTCCCAAAACGCGGAAggtatataatatagacagtataagTTAGTATATTACATTCATGTAATTATATTCCTGTCAGACAAGATCTATTTCTTTATAATCTCATAATAATTACGTATCATACAGACAATCTGATCACTGCAAAATATTCACTTTCTTTGGCTCACAAATTCACTATAATATAATTGATGAATTATTATTAGAATCTACAGATTACATCGAGAATATAGAATATCAATCAAAGATACTCATACAAATGGAAGAAAATACCTGACTTTTAAAACACTCGTAATGCTATAAATGAAGCATATTTATATATATCATTATCGTGTTAATATttaaacattttcaaaaatggTTACATACTGTTTGGTCCTTGCTATCCGGGATACTTGGAACGTCCTTACCCCATTGAAGTAGAACTTTTAAATGGTTAAGTAAAGGTTTAGGAttgggtaagggttatggttatggttaaggttagggtttagggtagggacgtcccaatgaACCCGGATAGCACTGACCCATACTGTATGCTTGTTTCACACACGCAAGGAGATCGTTTTCTACACGCTGCAAGTAGAAGTCGCTTTTAGACAAATATCTAGGATCAGCTCACCCTACCCCCAAACCCTAATATTAACCATAAGGGAGAAAAACATAACAGTGACCCTAGATCAGTATACAGGGGCAACGTCTTCTGACAGTTAACACTAAGGTCATAGTTCAAAGGTCAATACAGCATTAGGTTACAGCACAGggtacacacactgttacacacacttacacacacacacacctccacaaaACACACACTGGAGTTCAAGGTTTAACACTTTGAGTTGGTACATCTGACTTTAGAATGATCCTATATATACACTGAGCTCAAATTAAGTATCTCATATATCATAATATcacaatacactgagtgtacaaaacattaagaacacctgctctttccatgacatagactgaccagctgaatccaggtgaagctatgatcccttattgatttcacttgtttaatccacttcaatcagtgtagatgaagaggaggagaaaggttaaataaggatttttaagccttgagacaattgagacatggattgcgtgtgtgtgccattcagagggtgaatgggctagACTAAAGatgtaggtgcctttgaacagggtatggtagtaggtgctaggcgcacctgtttgtgtcaagaactgcaaagctgctgggcttttcacactcaatagtttcttgtgtgtatcaagaatggtctaccacccaaaagacatccagccaacttgatacaactgtgggaagcattggttaagatgggtcagcatccctgtggaacatttgacaccttgtggagtccatgccccgacgaattgaggctgttctgggggccACATGTGTACACTATACTATTTGTGCTCTCAAGCATTTCTTTGTatttacacacacacacgcacacacacacacacacacacacacacacacacacacacacacac
>TU850212
GAAACAACAGACAGACTTTATTGTAGCTGCAACATTGCATGATTGTGAGTTAAAGTGCCTCCTGTACCTTCCTAAGGACAAACCTCCCACTACGGCTTCATACACATCCAAATTGGTCACATGATTTAGGTCATTGTGCAGTTTACTTAGCTGGTCCCTACATACCATAAAGATATATTTATAATGACATAATTCTTAACTTACTGCAATACACATCCATTTCAAATGAAATGAATTAAAAAGCATAGTAGTGTGCAAAGACACGAACTGAAGCTCTTTGATTTACCAATGAGTTCCCAAAACGCGGAAggtatataatatagacagtataagTTAGTATATTACATTCATGTAATTATATTCCTGTCAGACAAGATCTATTTCTTTATAATCTCATAATAATTACGTATCATACAGACAATCTGATCACTGCAAAATATTCACTTTCTTTGGCTCACAAATTCACTATAATATAATTGATGAATTATTATTAGAATCTACAGATTACATCGAGAATATAGAATATCAATCAAAGATACTCATACAAATGGAAGAAAATACCTGACTTTTAAAACACTCGTAATGCTATAAATGAAGCATATTTATATATATCATTATCGTGTTAATATttaaacattttcaaaaatggTTACATACTGTTTGGTCCTTGCTATCCGGGATACTTGGAACGTCCTTACCCCATTGAAGTAGAACTTTTAAATGGTTAAGTAAAGGTTTAGGAttgggtaagggttatggttatggttaaggttagggtttagggtagggacgtcccaatgaACCCGGATAGCACTGACCCATACTGTATGCTTGTTTCACACACGCAAGGAGATCGTTTTCTACACGCTGCAAGTAGAAGTCGCTTTTAGACAAATATCTAGGATCAGCTCACCCTACCCCCAAACCCTAATATTAACCATAAGGGAGAAAAACATAACAGTGACCCTAGATCAGTATACAGGGGCAACGTCTTCTGACAGTTAACACTAAGGTCATAGTTCAAAGGTCAATACAGCATTAGGTTACAGCACAGggtacacacactgttacacacacttacacacaccacacacacacacaccttctgacAGAGTTGACCTAATTAAAATCTGTCTGATGTGAGATAGAGCGCAGACATTCATATTCAAATTCCTATAAAGTTTCAGTCAACGTTTAATTAAAGCACACAGAACTCTGATAGCCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU850210 False 1803 lncRNA 0.38 2 77246201 77264007
TU850212 True 1227 lncRNA 0.36 2 77246201 77255721

Neighbor

gene id symbol gene type direction distance location
LOC110530663 LOC105020301 coding upstream 35387 77181864 ~ 77210814 (+)
slc25a12 LOC106569494 coding upstream 90637 77127486 ~ 77155564 (+)
LOC118965635 NA coding upstream 156896 77087135 ~ 77090382 (+)
LOC110530659 LOC106569500 coding upstream 199754 77019461 ~ 77046447 (+)
LOC110530656 LOC106600124 coding upstream 525673 76526810 ~ 76720528 (+)
LOC110530673 NA coding downstream 48394 77312401 ~ 77344087 (+)
LOC110530672 NA coding downstream 108180 77372187 ~ 77377386 (+)
LOC110530676 NA coding downstream 121574 77385581 ~ 77386837 (+)
LOC110530677 LOC106569510 coding downstream 198796 77462803 ~ 77467237 (+)
LOC110530678 LOC106569511 coding downstream 214340 77478347 ~ 77541551 (+)
G748946 NA non-coding upstream 9615 77236309 ~ 77236586 (+)
G748945 NA non-coding upstream 10569 77235407 ~ 77235632 (+)
G748935 NA non-coding upstream 23335 77222357 ~ 77222866 (+)
G748933 NA non-coding upstream 24894 77221071 ~ 77221307 (+)
G748931 NA non-coding upstream 29169 77216516 ~ 77217032 (+)
G748964 NA non-coding downstream 8987 77272994 ~ 77273928 (+)
G749137 NA non-coding downstream 38730 77302737 ~ 77382611 (+)
G749252 NA non-coding downstream 168772 77432779 ~ 77433139 (+)
G749277 NA non-coding downstream 185988 77449995 ~ 77450329 (+)
G748917 NA other upstream 66073 77179344 ~ 77180128 (+)
G748905 NA other upstream 68852 77150663 ~ 77177349 (+)
G748432 NA other upstream 538557 76706730 ~ 76708278 (+)
LOC110530655 LOC106569480 other upstream 793764 76451222 ~ 76453376 (+)
G747987 cah12 other upstream 851872 76239950 ~ 76394329 (+)
G748959 LOC106569508 other downstream 2645 77266652 ~ 77272660 (+)
LOC110530993 LOC106569518 other downstream 620230 77863590 ~ 77887401 (+)
G749663 tcf3 other downstream 980203 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 1533135 78797142 ~ 78797548 (+)

Expression


Co-expression Network