XLOC_026447 (armc5)


Basic Information

Item Value
gene id XLOC_026447
gene name armc5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31042585 ~ 31057624 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051538
ATGTCTTTAGAACAAGGacttaaactaaatttaaaaagttCACACTGCGCCTCAGAGGCGTCCACCACTCTCCCAGAATCCTCTCTGACCTGGTGTTTGGCTCAGCTTTCCAAATCAAGTCTATTAGCAGACAGTGGACTGACAGGAGCTGACAACAAGGGTGCCGCAGGAGGAGATAAAGCCAGGGATGCAGACAAGAGACTCAAAGCTGGTCAGTGGAGGGCACTGGTGGCCATTCGGACACAGCACATCAAGGGAGGAGGCAGCAGGATCGCACGCTACCAGTCACGGGGAGGAATCCCTCCTTTGCTCGATCTCCTCAGGCGACCAGAAAGCTCCAGGAAGTTTGTGGACCTGGCACTGAGCATCTTGGCCAACTGCTGCACTGAAAAGGGGACCAGACTACAAGTAAGAAAGCTGGATGGCGTATCTGTTGTTGTGGATGTCCTCAAAAGAAATGTCTCTGTGGAGACTGTACAGAATCGAGCAGCACGAGCTCTGGGGAATCTCGCCATGGACCCAGAGGGCTCTTCTGAGGTCCACTCTGCAGGTGGTGTTCCTCTTCTCCTGCTCTGCCTCTCtgtctctcctcctcctcctccatcctCTCCCTCTTCAGTGACTCCAGCCTCTGAACTCTGCGCACCCAAAGTAGAGTGTGTCCAATCTGCCGCCCGGGCTCTTGTCTACCTCTCCGACACCCCTGCCAACCGCCTCCTGCTGCTTTCCCAAGGAGCTCTTCCTGCACTTGCTCAGTTCATTTCTCCAGAATACCCCGCAGGTCTGCAACGGGCGTCTCTGCGCGCCCTTCATGAGCTCACCAGAGGCTGCAGTGCGGAGTGTGCCAGAGAGATGTCCCGCTCTGGGGCTTTGACTCAGCTCGGGGTTCTGGCTTCGGGAGAAGACGGTCGGCCTTTGGAAGAGCTGGCGTTGAAGACTTTGGCTAATATGTGCTCTCAAGGCAGCCTGAGGCCTCTTGTGGGTTCGTTGGGAGTCATTCAGAAGTTTGCAGAGGAGGTGAAGAAGGACCCTCTGAGGTCGAGTGTGTTTTTTAAGGCCTTGTGTTTGTGCTGCAGGGAAGCTGTGAACAGGGCTAAAGTAAAAGAGAGCGGAGGATTAGAGGTGCTCATCAGTTTTCTGTCGGCTCATCAAAACCATCCGCTCACGCGCTTTGCATTTCTAGCTTGTGTGGACTTCGTTTATGATGAATCGGCTCTCGAGCAGCTGCAGGAGCTCGGGCTGGTGCCGCTGCTCATCAAGCGTTTAGTGGAACTTGCTCAAGGAGAAGAACCAAACACTGGGAAGATGGATGCCAGCCTGGCTTCTAGTTCTCCATGCTCTGAACTCATGAGCTCCTGCTTTAATTCTTTTGACTTCTCCGCACTTGAAGGAAACAAGAGGGAGGATGTGAGTAAAGACCAGACGGCAGGATCCTCCAGCTTCCTCAGCCTCAGGTCTTGGCTGGTGTCGGAGGGTCTGATCTCGTCTGAGGGTGAGCTGACTGAATGCCCGAGCGGACCTGATGTGTTTGGTGGCAGCCCTCAGTCCTCCGTCTCATCATCACCACTGCTCACACACTGCCCTGACCTCTCCCTCACCCCAACTTTACGCCCACCACACTTCTCTCCCTCATCTCGCTCCAAACTCACCCGTCCTGCCTCCTCATCCGCTCCAGTATCTCCTCGAAACATACCAGGGTCGCCTTCCTCCACACAGCCCTCCTGCACCTCCACCCCTCAAAATGAGCAACCGTCATCAGTGACCAAACCCTCCACCACCCCCTCATCTCCCCCCCAAATATCCTCTCCCCCCAGAAAGAGGCTCCGTGCAGcttcatcctcatcttcatcctcctatACATCATTCtcttcattttcatcatcatcctcctgGTCTACTGTGGTCTCCATAGAAACCCCACCCATGATGTCAAAACCCCCAATCTATAATCACCCGTATCACCCTGAAGTCTGGGCCCCAGAATCCCCCATTCTCCTGCTGCTGTCCCGCTTCTCTCATGCCCCAGACCCCAGCACAGCGCTCATCAACACCAGCGTTTTCTCCGGGCTCTTGTACTACCTCACCCAGCACCATGACCCCAGTGGCCGGTGCTTTCGGATGCTCGGGAGGCTCAGCTGTAACCCAAACTGCTTGCAGGCTCTGGTCAGAACTGGAGCCGTGGCTCTGATCCGACAGAAACTGTGTGTGAGAGGAGACGAGGCTGGAGGAACAGACAGACAGTCTGAAAAAGTCAAAGGGAAAATCACGCAGCTAGGTTTGGGTCTGCTTAGTAATCTGAGGGTTCAGAGTGAGTCTGGTTTTGGCACTGGAGTTCTTACACACATCATGCTGTCAGGATCTGAATCTGACAAACTGTACTGTGTGCTTTCCCTGCCACTGGTTAACAGCAACCGAGTTCTTTTGAAGAAGCTGCTTCTGGATAGCGGTGGGCTGGCAGCAGCTCTCGAACTGATTGATTATCACAGTGAAGATGTTGATGATAATGAAGATGGACAATCTGACAAATGCAGGACGTTTCTTGCCGGCTGGTTGCCTCCACAGGAACAAGTGTCCTCTTTGAGATGTAAGTCGCTTTACGCGTCTCTTCTGATTGGCTGCCTCTCCAGTCTGCTGTCAGCTTTCAAGGAAGACAGAAAGAACTGCAGCACAGATTGCAGGACCACCACGGAGGCGACTCAAATTTTGCACAACAAATCCCAACTGCAGCAAAACCAACCATGTCCCTATCAGAAGGCAACCCATAATCTAACTTTCCTCCTAGATGATGGGACCCTTCTCAAAGCCAATCACGAGGCTTTAACCGGGGAAGAGGGAGACAGCGGTGTtgggtctgagtatttcagagcACTCTTGATGGGAGGATTTGGTGAGGCTCAGAAAGATAAAGCTGAACCCATCCAAATCAAAGATGTCAAAAAGGGGATGCTCTTACCAGTTCTCCACTACCTACATGGCTGTCGTTGGACTGATGGAAATGAAGATCACGAGAAGTCAAAGCAAGATacacattgtcttgttttgtcCTCTCTAGTCTCCACAGGGTTTGCAAGACCACAGGATCAATCAGCGGAAAGGGAATTTATGAAATCCTCATTGGCCCAAGTGATGATTGGTGCTTGTAGGTTTTTAGTGCCTGGTTTACAGCAGGCAGCTGAAGATCTGTGTGTTGGCCTTCTTTACTCATTCGTAAGACGCCTGACCACATTTTCCTCTTTGAATAAAACCACTACTATGACCAGTGAAATGGATAAAGCGGGTACTGTCAGCAAGGGTCCTGAAGGATTGCAGCAAATGAGTAAAACTGAACCGTCAAAGTGTTTCAAACAACAATCTAAATGCTCTAAACTAGTCCTTCCTTCttctacatcatcatcatcatcatgttcaGACCGGGACAATGAAGGGTTTTGTTTGAGGTTTCTCCTGCCTCAGGTGTACTGGTTCTCTCAGCACTACTCTTACCTGCGGCTGGGCCAGGCCTGTCTGTCAGTCCTGCTCCAGCCCCAGGGGGTCTGCCTTCCACCTCTTCAACCCTCTCTGTCCACTGAATGCTTCCTGCGTTTGGCTCAAGAGGCAGACTGTGCAGAAGGGCTGAAGCAGGACATCTTAAACCTCGTCAAAACAGCCCTCAGCTAGAGAGCAAATGATAATAGTGGATCTAGTCTGATGAATGTCATCAGTTGTAGGTGTATTTAATACGTACTTTAATGAAATGTttcccaaccatgttcctggaggcacaccaacagtacatattttggatatcTCCCTAATCTGACCCactcatttcaggttttggagtctcttctaatctTCTGATGAGTTGAtacagatgtgtttgattaagaagatgttaaaaatgtgtactgttggtgtgcctttaggaacagggttgggaaacactgctttaatgcacaCAGAAGCGGAATGGGATTTCACTGGATTACTTTGGATTGGATGAAATTGAAAACTATTTGAGTTAGGAGAATTATGTTGAACGATGTTTAAAACGTTCTAAATTCTGATATTTTCGTgatcacttttatttttgttctccCCAAGACGTGTATGTGTAATGAGTAGAATGACCAACTGTAGATATTTTtagtaattatttttgttttttggccaAAAAAGGGTACATGCATCTACATCCAGATATATATAGTATGTGATTTTTGTAAGATATATTATGTGAATAAGAATATTTCAAAGGTGAAGAGCTGTTTATGTTcgctatatatttttctttttgtatatGGCACTGTATAATTTGTTAATAGAAATCTGGATTGTCTGTGTGTTGGAGTGCcatctcttttttttctgtacatATGAGATATTTAATCATGGAAATGGCCAAATATCGGTGGGAGGTGGAGAGGTCGGATGATTCTCAATAAATGAGCTCTGTGTTGATGTTGTCTGCATTGTCCTAAAACATTTGACCTATTAATTGTTAATAAGTTTgaaaattaatatgaaaaatacaGTCCTAACGTTTATTTCATTGTaattcaaataggttttgaaagcAGAGTATTGCTCAATTGATGTAAAAAGCTTGTTATACAAATGTAGATGATGAATATGGAAATGATgcactcatttatttttctttatcacttttaaaacttattttaaagctATTTAAAGTTGCTTTGTCTAACCAAGTCTTGTTCCAAATTTGAAGCAGGGTCGATAGACGATGTCCCTAATGTTGGACTATTTAACAAGGATTTAcggctggatcgcgtctcactatagttgttaaacgtgatatttaattattcTTGTCTCTGTCTaatgactcttcggtcttttgaatctatcaggtaacatgtcaTAGCGTCAATACACCttttcaatctttcgctttcacgcttgtacttagtgtTTTTAGCGAAAAAATGTAGAAActgttggttgctgttggttgtgcaccttttttaccagcCATGTATGTCGACGctattataacaacacagatcactccgcctattcatgccagagtcctgcagaaaaagtgattgacaggtggtaatttgtgtgtaacttatttctgatttggttatgggtgaaacaaagaccatgtgggtcaggtagttaactatttataaataatttattcaccgccgcctacgatgatgatgccattgtccattgcgatgtttcacattacacATTGTAggatgccaaattggttgacaaCGCCCAATCCTAATTTGAAGTTGATATCACAAAAATTCCTGTGATAAATGTGCTTTACAAGACACTCACctgaattaaatgtatttattttgattattcttTA

Function

symbol description
armc5 Human ortholog(s) of this gene implicated in ACTH-independent macronodular adrenal hyperplasia 2. Orthologous to human ARMC5 (armadillo repeat containing 5).

GO: NA

KEGG:

id description
ko04934 Cushing syndrome

ZFIN:

id description
ZDB-GENE-030131-7382 Human ortholog(s) of this gene implicated in ACTH-independent macronodular adrenal hyperplasia 2. Orthologous to human ARMC5 (armadillo repeat containing 5).

Ensembl:

ensembl_id ENSDARG00000078083

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051538 True 5335 mRNA 0.46 7 31042585 31057624

Neighbor

gene id symbol gene type direction distance location
XLOC_026445 si:dkeyp-71f10.5 coding downstream 22753 30998362 ~ 31019832 (-)
XLOC_026444 paqr4a coding downstream 79939 30947964 ~ 30962646 (-)
XLOC_026443 coro1a coding downstream 101223 30926364 ~ 30941362 (-)
XLOC_026442 kmt5c coding downstream 133098 30868326 ~ 30909487 (-)
XLOC_026441 BX682556.2 coding downstream 241927 30800541 ~ 30800658 (-)
XLOC_026448 elob coding upstream 5582 31063206 ~ 31079246 (-)
XLOC_026449 zgc:153292 coding upstream 23056 31080680 ~ 31086770 (-)
XLOC_026450 NA coding upstream 35588 31093212 ~ 31093764 (-)
XLOC_026451 arl6ip1 coding upstream 47267 31104891 ~ 31115996 (-)
XLOC_026452 smg1 coding upstream 60402 31118026 ~ 31158437 (-)
XLOC_026439 NA non-coding downstream 346295 30694877 ~ 30696290 (-)
XLOC_026432 NA non-coding downstream 840754 30199036 ~ 30201831 (-)
XLOC_026427 NA non-coding downstream 1003436 30036697 ~ 30039149 (-)
XLOC_026426 NA non-coding downstream 1019100 30019836 ~ 30023485 (-)
XLOC_026453 NA non-coding upstream 116509 31174133 ~ 31177209 (-)
XLOC_026457 NA non-coding upstream 453846 31511470 ~ 31600282 (-)
XLOC_026460 NA non-coding upstream 592629 31650253 ~ 31650711 (-)
XLOC_026469 NA non-coding upstream 878073 31935697 ~ 31957366 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02895817_02903000 NA coding CI01000069 null 2895690 ~ 2903000 (-)