G749585


Basic Information

Item Value
gene id G749585
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78189848 ~ 78191947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU850977
cccaatactttttgtaatttctaaatggttcacccgatatggatgacaATATTTTAAAAGTAAagttgacagtctgcactttaacttcATAGTCACTTGACAgttcagagccaaaacaacaacaaaatgtgtcactgtcccaatacttttggagctcactgtacacCATAAGGTCACTACAGAGCAACTGCATGGTTTCTCTGACTGCCTTTTCAATCATCTGATTCTGTGTTTTTAAGGCAATACCTATTTGTCTGTTTTGACAATTTGGCCCTGCATTTTTCTGAGGATAAGCTTTAGCCCGTTTTgaagtatggctgtgtgtgtgtctgtctgtgtccgtcTTTTCTGTCCTACCTGATTTCAGTGTTTATTTGTGGTATGTAGAGGCAAGCAATATAACCCCTAATCACTGGAAACCTGTGGCATGCCCAGGAATTCCAACTGCAATACCATGATCCAAGGAGTGGAATGCCAATCCCACATTTTCATTGGACCACTGAGTTGGAAATTCCCTGTTATAATGGACTCATCTCAATTTCCTTCTCATAGGacatgtgtgtgtttttcttgGCATAGAGGGAAATAGTTTGGGAATACTGTACATTGGAGAGAATTAATTTCAGCTTACATTAAGATCTCTCCTATCTGCTGTTCAGTCAGCTCCTGGTCTGACTTTTCCAGAGGATGACTTTGCAAAGATTGTGATGAATGGACCAACTCAAATGGACCAGCTAGTGTTTTTCAAAGACTTGTGTTGACTAGTAGAAGTGTCAACGCCCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATAGAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCATTGTAGTTTAATAATATCACATCAAGCCATCGTAGTATTTTAATAATACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTATTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCGTAGTAGTTTAATAATACCACATCAAGCCATCTATATATCAACCACCCACTCAGCACGTAaagatctgtcgatgtgcccgtgagcaaggcacttaaacctaatttgctccaggggcgcccTACCCAACCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU850977 True 1844 lncRNA 0.37 2 78189848 78191947

Neighbor

gene id symbol gene type direction distance location
LOC110530995 LOC106569526 coding upstream 1799 78072559 ~ 78188049 (+)
LOC110530688 LOC106569524 coding upstream 143074 78038094 ~ 78046774 (+)
LOC110530687 LOC106569523 coding upstream 212056 77973674 ~ 77977792 (+)
LOC110530684 LOC106569521 coding upstream 225987 77954717 ~ 77963861 (+)
LOC110530683 LOC106569519 coding upstream 270361 77894988 ~ 77919487 (+)
onecut3b onecut3 coding downstream 143954 78335901 ~ 78361471 (+)
LOC110530701 LOC106569539 coding downstream 400351 78592298 ~ 78597767 (+)
plekhj1 plekhj1 coding downstream 415466 78607413 ~ 78610245 (+)
LOC110530703 LOC106569538 coding downstream 434574 78626521 ~ 78636077 (+)
LOC110530704 LOC106569544 coding downstream 624173 78816120 ~ 78824322 (+)
G749557 NA non-coding upstream 168035 78021343 ~ 78021813 (+)
G749547 NA non-coding upstream 190895 77998733 ~ 77998953 (+)
G749536 NA non-coding upstream 235867 77953768 ~ 77953981 (+)
G749535 NA non-coding upstream 237240 77952395 ~ 77952608 (+)
G749531 NA non-coding upstream 241228 77948322 ~ 77948620 (+)
G749588 NA non-coding downstream 1722 78193669 ~ 78200686 (+)
G749654 NA non-coding downstream 32607 78224554 ~ 78224777 (+)
G749655 NA non-coding downstream 34507 78226454 ~ 78226721 (+)
G749657 LOC106569530 non-coding downstream 37488 78229435 ~ 78233263 (+)
G749667 NA non-coding downstream 44449 78236396 ~ 78236879 (+)
LOC110530993 LOC106569518 other upstream 302492 77863590 ~ 77887401 (+)
G749137 NA other upstream 807237 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 917188 77266652 ~ 77272660 (+)
G748917 NA other upstream 1009720 77179344 ~ 77180128 (+)
G748905 NA other upstream 1012499 77150663 ~ 77177349 (+)
G749663 tcf3 other downstream 52263 78244210 ~ 78245615 (+)
G750533 LOC106569543 other downstream 605195 78797142 ~ 78797548 (+)
G750854 NA other downstream 787283 78979230 ~ 78979981 (+)
G750935 NA other downstream 1003323 79195270 ~ 79197378 (+)
ncana LOC106569686 other downstream 1153490 79210727 ~ 79347454 (+)

Expression


Co-expression Network