XLOC_026448 (elob)


Basic Information

Item Value
gene id XLOC_026448
gene name elob
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31063206 ~ 31079246 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051539
GATGTGTGAACGCGCATGCGCATGAGGACCACCATTTGTGGTAGCAACAGAAGCTAATGGAAAGACGCTCGTCAGTTGTAAAGgaaagaaaaaaaaagccaccCAGATGGAGCTTCTTCAGCAGAATGTGGCAGCTGCAGGACGGGTGATCATGGACGCGATCCAGGCTGAATGGGAGCCGCTGTCTAACTGGGAGCTGGACCAGCGGCTGGACCGTGCTGTGGAGGAGATGATAGAGGCTGACCTAGTGGCGCAGGTACAGGAGCAGATAAACTCAGCTCAACAGAAGGACTCAGCAGATCAGACACAGACTCCAAAGCAGTCAGAGCCCAAGCAGCCCGTTCAAGAGTCTGCCTTACAGCGTTCACATGCTACTGAAGTCATGGAGGCAAATCCCACCGTTCAGTATGTTACCAATTTTTTGCAGAGCTCCAACATGGGCTACAGCAAAAACCGCATGTCTGGAAGAGCTCGGCTGTCCATGTCTCACACTGTCCTGCTGTCCCTCACCCTCCTGTCCAAACGTGTCAGCTATCGGAGCGTGTCCTCCAGTTTCCATCTGGAGAAGGGAAATATTCACAGGATCTTCTTTTCTTTCTGTGATCAAGTGATCGCACAGCAGAATCGCATCATTCAGTGGCCTACAGGACAGGAGGCAATACAAAATCTGCTCCCTTTCTCCAGCTGGCACAGTCGCAGTGAGGGTCTGGAAGAAAGAGGTCTTCCTAGAGTACTCGGGGTGCTGGGCGACACACGCATTCCTATACGCCTTCCCTCGGGAAAACCAGACAGTGAAACGGACGCTCCGGATGCCAAAAAACTCAAGAGTGAAGTGCATCCTGATTCATGGCTGAACTTGGAGCTGGTGTGCAACGGTGACGGACGGTTCATTTACTGCCATATCAGCAAAGGCTCAGAAAGTGACAGAGGAAAAGCATTGACTGAAAGGCTTCAGAAACACCCTGAGATGCTTCCTCCAGGAGCCTGTCTGATAGCCGGAGTTGGACATCCACTTACTGAACAAATACTTACTCCATTTTCAACTGGCCGAAGTCCACAGGAAAACCTCTACAACAGAGCGCTGGGGAACCATTTGGGCCGATTCAACCAGGCAGTGGCAGACCTGAAAGAGCGATTCCAGAAGCTGAGGTATTTGGATATGGGGAACTTTGAGAGGGCAAAGACTGTGGTTCTGACAGCTTGTGTTTTGCACAATGTTTTCCTGGACATGGGGGACGTGACGAAGGGACTGATAGAGAAAAGCGCAGTGAAAGATGTGGAGGAGCTCAACCAAGATGCTGCTGGGGTGAAAATGAGGGAGACTGTGGCCAATCTTCTTTATAGCTCACTAGAAGAAGGGACACTATAAGATTTTGacactaatttgcatatttaaaggaATAATTGACCCAAATTAAATTTGTTGTCATTTGATCA
>TCONS_00051540
tccaCATGCATTGTCGCTTCTTGGAGTAATGTGGCAGCTGCAGGACGGGTGATCATGGACGCGATCCAGGCTGAATGGGAGCCGCTGTCTAACTGGGAGCTGGACCAGCGGCTGGACCGTGCTGTGGAGGAGATGATAGAGGCTGACCTAGTGGCGCAGGTACAGGAGCAGATAAACTCAGCTCAACAGAAGGACTCAGCAGATCAGACACAGACTCCAAAGCAGTCAGAGCCCAAGCAGCCCGTTCAAGAGTCTGCCTTACAGCGTTCACATGCTACTGAAGTCATGGAGGCAAATCCCACCGTTCAGTATGTTACCAATTTTTTGCAGAGCTCCAACATGGGCTACAGCAAAAACCGCATGTCTGGAAGAGCTCGGCTGTCCATGTCTCACACTGTCCTGCTGTCCCTCACCCTCCTGTCCAAACGTGTCAGCTATCGGAGCGTGTCCTCCAGTTTCCATCTGGAGAAGGGAAATATTCACAGGATCTTCTTTTCTTTCTGTGATCAAGTGATCGCACAGCAGAATCGCATCATTCAGTGGCCTACAGGACAGGAGGCAATACAAAATCTGCTCCCTTTCTCCAGCTGGCACAGTCGCAGTGAGGGTCTGGAAGAAAGAGGTCTTCCTAGAGTACTCGGGGTGCTGGGCGACACACGCATTCCTATACGCCTTCCCTCGGGAAAACCAGACAGTGAAACGGACGCTCCGGATGCCAAAAAACTCAAGAGTGAAGTGCATCCTGATTCATGGCTGAACTTGGAGCTGGTGTGCAACGGTGACGGACGGTTCATTTACTGCCATATCAGCAAAGGCTCAGAAAGTGACAGAGGAAAAGCATTGACTGAAAGGCTTCAGAAACACCCTGAGATGCTTCCTCCAGGAGCCTGTCTGATAGCCGGAGTTGGACATCCACTTACTGAACAAATACTTACTCCATTTTCAACTGGCCGAAGTCCACAGGAAAACCTCTACAACAGAGCGCTGGGGAACCATTTGGGCCGATTCAACCAGGCAGTGGCAGACCTGAAAGAGCGATTCCAGAAGCTGAGGTATTTGGATATGGGGAACTTTGAGAGGGCAAAGACTGTGGTTCTGACAGCTTGTGTTTTGCACAATGTTTTCCTGGACATGGGGGACGTGACGAAGGGACTGATAGAGAAAAGCGCAGTGAAAGATGTGGAGGAGCTCAACCAAGATGCTGCTGGGGTGAAAATGAGGGAGACTGTGGCCAATCTTCTTTATAGCTCACTAGAAGAAGGGACACTATAA
>TCONS_00051541
GCAACAGAAGCTAATGGAAAGACGCTCGTCAGTTGTAAAGTGttttgctttaattaaaaaaaaggaaagaaaaaaaaagccaccCAGATGGAGCTTCTTCAGCAGAATGTGGCAGCTGCAGGACGGGTGATCATGGACGCGATCCAGGCTGAATGGGAGCCGCTGTCTAACTGGGAGCTGGACCAGCGGCTGGACCGTGCTGTGGAGGAGATGATAGAGGCTGACCTAGTGGCGCAGGTACAGGAGCAGATAAACTCAGCTCAACAGAAGGACTCAGCAGATCAGACACAGACTCCAAAGCAGTCAGAGCCCAAGCAGCCCGTTCAAGAGTCTGCCTTACAGCGTTCACATGCTACTGAAGTCATGGAGGCAAATCCCACCGTTCAGTATGTTACCAATTTTTTGCAGAGCTCCAACATGGGCTACAGCAAAAACCGCATGTCTGGAAGAGCTCGGCTGTCCATGTCTCACACTGTCCTGCTGTCCCTCACCCTCCTGTCCAAACGTGTCAGCTATCGGAGCGTGTCCTCCAGTTTCCATCTGGAGAAGGGAAATATTCACAGGATCTTCTTTTCTTTCTGTGATCAAGTGATCGCACAGCAGAATCGCATCATTCAGTGGCCTACAGGACAGGAGGCAATACAAAATCTGCTCCCTTTCTCCAGCTGGCACAGTCGCAGTGAGGGTCTGGAAGAAAGAGGTCTTCCTAGAGTACTCGGGGTGCTGGGCGACACACGCATTCCTATACGCCTTCCCTCGGGAAAACCAGACAGTGAAACGGACGCTCCGGATGCCAAAAAACTCAAGAGTGAAGTGCATC
>TCONS_00051542
GATGTGTGAACGCGCATGCGCATGAGGACCACCATTTGTGGTAGCAACAGAAGCTAATGGAAAGACGCTCGTCAGTTGTAAAGgaaagaaaaaaaaagccaccCAGATGGAGCTTCTTCAGCAGAATGTGGCAGCTGCAGGACGGGTGATCATGGACGCGATCCAGGCTGAATGGGAGCCGCTGTCTAACTGGGAGCTGGACCAGCGGCTGGACCGTGCTGTGGAGGAGATGATAGAGGCTGACCTAGTGGCGCAGGTACAGGAGCAGATAAACTCAGCTCAACAGAAGGACTCAGCAGATCAGACACAGACTCCAAAGCAGTCAGAGCCCAAGCAGCCCGTTCAAGAGTCTGCCTTACAGCGTTCACATGCTACTGAAGTCATGGAGGCAAATCCCACCGTTCAGTATGTTACCAATTTTTTGCAGAGCTCCAACATGGGCTACAGCAAAAACCGCATGTCTGGAAGAGCTCGGCTGTCCATGTCTCACACTGTCCTGCTGTCCCTCACCCTCCTGTCCAAACGTGTCAGCTATCGGAGCGTGTCCTCCAGTTTCCATCTGGAGAAGGGAAATATTCACAGGATCTTCTTTTCTTTCTGTGATCAAGTGATCGCACAGCAGAATCGCATCATTCAGTGGCCTACAGGAGGCAATACAAAATCTGCTCCCTTTCTCCAGCTGGCACAGTCGCAGTGAGGGTCTGGAAGAAAGAGGTCTTCC
>TCONS_00051543
GCGAAACAGACGTAGAGAAATGgaTGTCTTTTTGATGATCAGACGTCACAAGACAACCATCTTTACAGATGCTAAGGAGTCTACCACAGTCTATGAGCTGAAGCGGATTGTGGAGGGCATTCTGAAGCGAGCACCGGAAGATCAGAGGCTCTATAAGgaaagaaaaaaaaagccaccCAGATGGAGCTTCTTCAGCAGAATGTGGCAGCTGCAGGACGGGTGATCATGGACGCGATCCAGGCTGAATGGGAGCCGCTGTCTAACTGGGAGCTGGACCAGCGGCTGGACCGTGCTGTGGAGGAGATGATAGAGGCTGACCTA
>TCONS_00051544
GGAGGACTGGATCGAGCGCTTTGATTTCCGCAGTGCAGCGTGGGATAGTGGAAGAAGTCAGCGAAACAGACGTAGAGAAATGgaTGTCTTTTTGATGATCAGACGTCACAAGACAACCATCTTTACAGATGCTAAGGAGTCTACCACAGTCTATGAGCTGAAGCGGATTGTGGAGGGCATTCTGAAGCGAGCACCGGAAGATCAGAGGCTCTATAAGGATGACATGCTGTTAGAAGATAGTAAGACTCTTGGAGACTGTGGATTCACAAACCAGACAGCCAGACCTCAGGCTCCAGCCACAGTAGGACTGGCTTTTCGCATCAGCGATGATGCTTTTGAGCCTCTAAGAATAGAGGCCTTCTCCAgccctcctgagcttcctgatgTTATGAAGCCTCAAGACTCGGGCAGCACCGCCAACGAACAAGCCGTGCAGTGAAGGACGAACCAACGATAAAGGGTTGGGGGGGAGGGAGGGTGGGGGATGGACAGCAGGGGTAAAGAGTGTCCAAAACAATGTGCGTGTTTTAAGATGGCGGTGTGTATCGAGTTACAGCAAGAGGGGGGAATAAGCATGAGTGAGAGTGGTCTCGTGTGATATTGAAACTTTGCTGAGAATTTGAATCGCTCTCCCTGTTACTCCTCATGTCCCATCAAGCACTAGCAGCTTAACTCTCACCGTATTGTCGCAAAACCCTTCCTATATTTAGTGTCTGCTCATCTACAGGTTCATACACCAATCACAACGCCCTCTCCCCTTCACGCGCAGGCACATTTTGATTTCTGGTAACATTTCCCCTCATTTCTGGATGAATTTTTGCTCATTTGTCAGACCCAAGTATTTAAACCTGTGCTTCTTATTTAATTCACGCAAATGTTATGTTTGGAGAGTTCGACCTTTTGTGCTTTTTGTGTGTTTCGATCTGTTAGGGGCTGGGGTGGGTTTGTGTTAGTGGCTGTAAGGTTTTACAAAGGCCCACTTTACTGATCGCATTTACAGTACGCTGTTGTGTGTAATGAGTATTGATATTATAATTATTCTTATTTAGATCCTTCATAATTTTATTGGGGTGCAAAAAGGCCGTAGGCTGAATCGTTTTATGTTACCGACTTACTCTATAGTGTAAATGCACATGGAACTGACTGAACTTCAGAATGGGCATGGATGCCATCAGGTTATACCTGCAAATTATAATACACAGCACATGGTTATGGTGAATTCTGACATACAGTGGTttcattgtaaatacatttttccaCATGCATTGTCGCTTCTTGGAGTGTGTGTTGCATTTCTTTATCATTTTGTGTTGGAGTTagtgtcttgtttttgaatctttaGTTTGGAGGCTCAAGTATTCACATTCAGTTCTCTGGTTTTATGTTTCAATCAAAGAAGAGTGTAAatgcttttgtcttttttttttttctttgtgtgcgtgtgtgtggcaTTTTAAAATGGTGGAAAGAATCATGTATAAAATATTAAGATCAATAAGAATGAAGCCTTTGGGCACAGTTGCTTAAAAAAGTGAATGTTTAACACAAAAGCTGACATTGTGTTCATcccaagggaaaaaaaaaagaaacaaactccTAATGTTTTTGCAAACTCACTCTTGTCCTTCTCGGTGATGGCAGTGTTCCTTCACAGTGCTcttacaaaaataacaaacagaaagttacaaactgaaaataaaaccatTCTGCAGTATCTGTAactgcatttaaataaattaaaatcagccCTTTTCCA
>TCONS_00051545
ATCTGcttttcttttcattcttttattggAGAAAACAGCGGTGGTTTTACTTGTAAATTTCGAAAACAacgttttttttactatttattctcAATTgaTGTCTTTTTGATGATCAGACGTCACAAGACAACCATCTTTACAGATGCTAAGGAGTCTACCACAGTCTATGAGCTGAAGCGGATTGTGGAGGGCATTCTGAAGCGAGCACCGGAAGATCAGAGGCTCTATAAGGATGACATGCTGTTAGAAGATAGTAAGACTCTTGGAGACTGTGGATTCACAAACCAGACAGCCAGACCTCAGGCTCCAGCCACAGTAGGACTGGCTTTTCGCATCAGCGATGATGCTTTTGAGCCTCTAAGAATAGAGGCCTTCTCCAgccctcctgagcttcctgatgTTATGAAGCCTCAAGACTCGGGCAGCACCGCCAACGAACAAGCCGTGCAGTGAAGGACGAACCAACGATAAAGGGTTGGGGGGGAGGGAGGGTGGGGGATGGACAGCAGGGGTAAAGAGTGTCCAAAACAATGTGCGTGTTTTAAGATGGCGGTGTGTATCGAGTTACAGCAAGAGGGGGGAATAAGCATGAGTGAGAGTGGTCTCGTGTGATATTGAAACTTTGCTGAGAATTTGAATCGCTCTCCCTGTTACTCCTCATGTCCCATCAAGCACTAGCAGCTTAACTCTCACCGTATTGTCGCAAAACCCTTCCTATATTTAGTGTCTGCTCATCTACAGGTTCATACACCAATCACAACGCCCTCTCCCCTTCACGCGCAGGCACATTTTGATTTCTGGTAACATTTCCCCTCATTTCTGGATGAATTTTTGCTCATTTGTCAGACCCAAGTATTTAAACCTGTGCTTCTTATTTAATTCACGCAAATGTTATGTTTGGAGAGTTCGACCTTTTGTGCTTTTTGTGTGTTTCGATCTGTTAGGGGCTGGGGTGGGTTTGTGTTAGTGGCTGTAAGGTTTTACAAAGGCCCACTTTACTGATCGCATTTACAGTACGCTGTTGTGTGTAATGAGTATTGATATTATAATTATTCTTATTTAGATCCTTCATAATTTTATTGGGGTGCAAAAAGGCCGTAGGCTGAATCGTTTTATGTTACCGACTTACTCTATAGTGTAAATGCACATGGAACTGACTGAACTTCAGAATGGGCATGGATGCCATCAGGTTATACCTGCAAATTATAATACACAGCACATGGTTATGGTGAATTCTGACATACAGTGGTttcattgtaaatacatttttccaCATGCATTGTCGCTTCTTGGAGTGTGTGTTGCATTTCTTTATCATTTTGTGTTGGAGTTagtgtcttgtttttgaatctttaGTTTGGAGGCTCAAGTATTCACATTCAGTTCTCTGGTTTTATGTTTCAATCAAAGAAGAGTGTAAatgcttttgtcttttttttttttctttgtgtgcgtgtgtgtggcaTTTTAAAATGGTGGAAAGAATCATGTATAAAATATTAAGATCAATAAGAATGAAGCCTTTGGGCACAGTTGCTTAAAAAAGTGAATGTTTAACACAAAAGCTGACATTGTGTTCATcccaagggaaaaaaaaaagaaacaaactccTAATGTTTTTGCAAACTCACTCTTGTCCTTCTCGGTGATGGCAGTGTTCCTTCACAGTGCTcttacaaaaataacaaacagaaagttacaaactgaaaataaaa

Function

symbol description
elob Predicted to enable metal ion binding activity. Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be part of VCB complex and elongin complex. Is expressed in several structures, including axis; mesoderm; notochord; retina; and solid lens vesicle. Orthologous to human ELOB (elongin B).

GO:

id name namespace
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0030891 VCB complex cellular_component
GO:0070449 elongin complex cellular_component

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04066 HIF-1 signaling pathway
ko05200 Pathways in cancer
ko05211 Renal cell carcinoma
ko05170 Human immunodeficiency virus 1 infection
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-020415-1 Predicted to enable metal ion binding activity. Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be part of VCB complex and elongin complex. Is expressed in several structures, including axis; mesoderm; notochord; retina; and solid lens vesicle. Orthologous to human ELOB (elongin B).

Ensembl:

ensembl_id ENSDARG00000037980 ENSDARG00000097471 ENSDARG00000097740

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051539 False 1437 mRNA 0.50 4 31063206 31068468
TCONS_00051540 False 1272 mRNA 0.51 4 31063274 31069776
TCONS_00051541 False 820 mRNA 0.51 4 31063804 31068425
TCONS_00051542 False 721 mRNA 0.52 4 31063917 31068468
TCONS_00051543 False 321 mRNA 0.51 3 31066787 31079186
TCONS_00051544 False 1756 mRNA 0.42 4 31069276 31079246
TCONS_00051545 True 1715 mRNA 0.41 4 31069331 31078348

Neighbor

gene id symbol gene type direction distance location
XLOC_026446 NA coding downstream 4916 31041952 ~ 31058290 (-)
XLOC_026447 armc5 coding downstream 5582 31042585 ~ 31057624 (-)
XLOC_026445 si:dkeyp-71f10.5 coding downstream 43374 30998362 ~ 31019832 (-)
XLOC_026444 paqr4a coding downstream 100560 30947964 ~ 30962646 (-)
XLOC_026443 coro1a coding downstream 121844 30926364 ~ 30941362 (-)
XLOC_026449 zgc:153292 coding upstream 1434 31080680 ~ 31086770 (-)
XLOC_026450 NA coding upstream 13966 31093212 ~ 31093764 (-)
XLOC_026451 arl6ip1 coding upstream 25645 31104891 ~ 31115996 (-)
XLOC_026452 smg1 coding upstream 38780 31118026 ~ 31158437 (-)
XLOC_026453 NA coding upstream 94887 31174133 ~ 31177209 (-)
XLOC_026441 BX682556.2 non-coding downstream 262548 30800541 ~ 30800658 (-)
XLOC_026439 NA non-coding downstream 366916 30694877 ~ 30696290 (-)
XLOC_026432 NA non-coding downstream 861375 30199036 ~ 30201831 (-)
XLOC_026427 NA non-coding downstream 1024057 30036697 ~ 30039149 (-)
XLOC_026457 NA non-coding upstream 432224 31511470 ~ 31600282 (-)
XLOC_026460 NA non-coding upstream 571007 31650253 ~ 31650711 (-)
XLOC_026469 NA non-coding upstream 856451 31935697 ~ 31957366 (-)

Expression


Co-expression Network