G749663 (tcf3)


Basic Information

Item Value
gene id G749663
gene name tcf3
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78244210 ~ 78245615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU851066
AGAAAAATAAATGTTACGCTCACGCATGCCACAACAATACATAGGGTATTGACAGTTACAGTATGACAGCTTACCTGGGTGTTACATATGGTTCACAGAGTTGTGTCCATCGCCGCCTAACCCGGGGTGCCCCCCTCCCATCTGCATCTGGGGGTCCACCCCCGAaactttctcttcctccctccgcTTCAGACACGCTGCCTTGGGGTTCAGGTTACGCTCCGGACCTGCTTCTCCAGGCCCATAATGACCTGCGAGGCCTGCTGCAGGATGATGAGTTTGGTCTGGGCCTTGTCGCCGCGCAGGTGCACCTGCACCATCCGGCCCAGCTCCCTGAACGCCTCGTTAATGTCGCGCACGCGCACCCTCTCCCGGACGTTGTTGGCCGAGCGGCGCTCCCGCTCacgcttctccttctcctctgccgTCAGGTTGTCGTCGCTGGGCGAGGCCACGCTGCAGCTGCT

Function

symbol description
tcf3 Enables several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; DNA-binding transcription factor binding activity; and protein dimerization activity. Contributes to E-box binding activity. Involved in several processes, including B cell lineage commitment; positive regulation of B cell proliferation; and regulation of transcription, DNA-templated. Acts upstream of or within immunoglobulin V(D)J recombination and positive regulation of transcription by RNA polymerase II. Located in cytoplasm; euchromatin; and nucleoplasm. Part of RNA polymerase II transcription regulator complex. Implicated in agammaglobulinemia and colorectal cancer. Biomarker of colorectal cancer and prostate cancer.

NR:

description
PREDICTED: transcription factor E2-alpha isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU851066 True 467 TUCP 0.60 2 78244210 78245615

Neighbor

gene id symbol gene type direction distance location
LOC110530995 LOC106569526 coding upstream 56161 78072559 ~ 78188049 (+)
LOC110530688 LOC106569524 coding upstream 197436 78038094 ~ 78046774 (+)
LOC110530687 LOC106569523 coding upstream 266418 77973674 ~ 77977792 (+)
LOC110530684 LOC106569521 coding upstream 280349 77954717 ~ 77963861 (+)
LOC110530683 LOC106569519 coding upstream 324723 77894988 ~ 77919487 (+)
onecut3b onecut3 coding downstream 90286 78335901 ~ 78361471 (+)
LOC110530701 LOC106569539 coding downstream 346683 78592298 ~ 78597767 (+)
plekhj1 plekhj1 coding downstream 361798 78607413 ~ 78610245 (+)
LOC110530703 LOC106569538 coding downstream 380906 78626521 ~ 78636077 (+)
LOC110530704 LOC106569544 coding downstream 570505 78816120 ~ 78824322 (+)
G749664 LOC100194703 non-coding upstream 3905 78240062 ~ 78240305 (+)
G749668 NA non-coding upstream 6965 78236977 ~ 78237245 (+)
G749667 NA non-coding upstream 7331 78236396 ~ 78236879 (+)
G749657 LOC106569530 non-coding upstream 10947 78229435 ~ 78233263 (+)
G749655 NA non-coding upstream 17489 78226454 ~ 78226721 (+)
G749662 NA non-coding downstream 42959 78288574 ~ 78290011 (+)
G749731 NA non-coding downstream 85385 78331000 ~ 78331201 (+)
G749734 NA non-coding downstream 90022 78335637 ~ 78335842 (+)
G749715 NA non-coding downstream 116625 78362240 ~ 78362706 (+)
G749781 NA non-coding downstream 187071 78432686 ~ 78433063 (+)
LOC110530993 LOC106569518 other upstream 356854 77863590 ~ 77887401 (+)
G749137 NA other upstream 861599 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 971550 77266652 ~ 77272660 (+)
G748917 NA other upstream 1064082 77179344 ~ 77180128 (+)
G748905 NA other upstream 1066861 77150663 ~ 77177349 (+)
G750533 LOC106569543 other downstream 551527 78797142 ~ 78797548 (+)
G750854 NA other downstream 733615 78979230 ~ 78979981 (+)
G750935 NA other downstream 949655 79195270 ~ 79197378 (+)
ncana LOC106569686 other downstream 1099822 79210727 ~ 79347454 (+)
LOC110530726 LOC106600567 other downstream 1302882 79548127 ~ 79579010 (+)

Expression


Co-expression Network