XLOC_026449 (zgc:153292)


Basic Information

Item Value
gene id XLOC_026449
gene name zgc:153292
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31080680 ~ 31086770 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051546
ATTATCaaCATGGTAGAAAATCTGGTGAAGAAGCATCCAGACAGTTGGCATGTTCATTTGCCTGTTAGCGTGCTGCGATTTAACTGCAGTGTCCATCCAGAAACCAAACACAGACCCTTGGTTCTTCATCGGTGTGAGGGAAAAAAGCCTTATACATCACCCAGAGATCAGCCACTCAGTGAAGATGATCTTGCAAAGTACTCATTCAAAATCCAGAAACCAAATCCTTTAAAAGAAATTGAGGCACTTAAACGAATATTCCGTGAGTATAACCCTATGCTGTCTGAAGCATTATCAGTGTCTGCTTTTCCTTTACATCTGTGGTCATTAACTTTTCAAATTTAACACAGGAGAATCAGCGGATTGCATTGTTATTTCATGAAGCAAGCTCTGGGTAAGTGTGAGTTAACAGTACCAAGTTGTTGTTGTTACTTATGGTTGTTGCTTATTTGTTAATCTCCAGAATGTTcagtagttttctttttttttctgttgctagTGTGCCTGAATATCATTACTGGAGTGTGAGGAAGAAGCTCTGTACAGAACGTATCAATGAAGGGATGGAGGATAATGAACCCTGGAGTCCAGAGAGACTGTTATTATGATTGTGACTTTCATATTGAAATATAATGCAACATTGTGAATAAATACCTTTTTAATGGTATACAATAGAGTAGTATTAATATAAA
>TCONS_00051547
AGCATTCAGTCTGCCACAAAATCCACCAAAGAACCGTTTCCGGAAAAACAAAACACGCTCGCTGATCTAAATCTAATTGAAGTTGAGTAAATCCTTTTAAAATGCCAGTGTGCTCCGCGTATAAGTGCAAGAAGCGTTCAGACAGAGAGTATAAAGAGGCATACAAGAGGGGCGAGTTTTCTTTTCACAAATTCCCGCTGGAGGACGGCCTGAGGGTCCGAGAATGGCTCCGGCGGATGAGATGGCAGAACTGGTGGCCCACTGGAAACTCTGTCCTGTGCTCGGACCATTTTGAGAAGGACTGCTTTGAGCAAGTGGGCAGCCACAAAAGACTGCGAAAAAGTGCTGTCCCGACTATCTTTAATTTCCCTAAGCATCTCCAGTGGAAGGTGCCAGCTGTCAAAAGGCGATCTCTGAATCGTACGCCGGTTGCAGTGCCTATTAAACCAAAACCAACCCTAGTGTCAGCACCAGTAACACCACGGCTTGAAGGGACATTTGTTCGTGTGAATGTGGATTCAAATGGTTCCAGCCGTGGACTCTTTCACGCTGGCAGCTTCCACGATGACTACTGCAAACCTCAGAGCTTTCACTGGATGAAGCTGTCGGAGGGTGATGGCGAATCTGATGATGACTCTAGTGACCCTGAAAGTGATGTCACCAGTGATGATGCACCTCTTGAAACCCCACAAAATCCAAACTCCAAGTTTATCAAGGTGACAGAGAGATGGCAGTGGCTGAGTATAGATGTAACCGGGCCATTTCAAGAAAGCAAAGGCCCCTACAGTCACATCGTGGTCATCTGTGACTATTACACCAAGTGGATTGAAATTTTCCCGACAGAAAAGCCTAATTCTGATTCTGTTGCCCTGCTTATGTGTGATGCCATTTCCCGATATGGTTTTCCTCTAGGGTTTCTCACTCCTTGGGGAGCAAGAGGGATTCAGGTCAGAACGGTTAACAGAGCACTGAATAACATTTTGATGATAAAGGATATTTCCCTTGTCTCTCGACATCACCAGGCGTCACAGCTGGAGCCACACACTCAGTATCACATTATCaaCATGGTAGAAAATCTGGTGAAGAAGCATCCAGACAGTTGGCATGTTCATTTGCCTGTTAGCGTGCTGCGATTTAACTGCAGTGTCCATCCAGAAACCAAACACAGACCCTTGGTTCTTCATCGGTGTGAGGGAAAAAAGCCTTATACATCACCCAGAGATCAGCCACTCAGTGAAGATGATCTTGCAAAGTACTCATTCAAAATCCAGAAACCAAATCCTTTAAAAGAAATTGAGGCACTTAAACGAATATTCCGAGAATCAGCGGATTGCATTGTTATTTCATGAAGCAAGCTCTGGTGTGCCTGAATATCATTACTGGAGTGTGAGGAAGAAGCTCTGTACAGAACGTATCAATGAAGGGATGGAGGATAATGAACCCTGGAGTCCAGAGAGACTGTTATTATGATTGTGACTTTCATATTGAAATATAATGCAACATTGTGAATAAATACCTTTTTAATGGTATACAA

Function

symbol description
zgc:153292 Predicted to enable metal ion binding activity and sequence-specific DNA binding activity. Predicted to be located in nucleoplasm.

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005575 cellular_component cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-1098 Predicted to enable metal ion binding activity and sequence-specific DNA binding activity. Predicted to be located in nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000070458

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051546 False 692 lncRNA 0.37 3 31080680 31082367
TCONS_00051547 True 1534 mRNA 0.45 13 31080700 31086770

Neighbor

gene id symbol gene type direction distance location
XLOC_026448 elob coding downstream 1434 31063206 ~ 31079246 (-)
XLOC_026446 NA coding downstream 22390 31041952 ~ 31058290 (-)
XLOC_026447 armc5 coding downstream 23056 31042585 ~ 31057624 (-)
XLOC_026445 si:dkeyp-71f10.5 coding downstream 60848 30998362 ~ 31019832 (-)
XLOC_026444 paqr4a coding downstream 118034 30947964 ~ 30962646 (-)
XLOC_026450 NA coding upstream 6442 31093212 ~ 31093764 (-)
XLOC_026451 arl6ip1 coding upstream 18121 31104891 ~ 31115996 (-)
XLOC_026452 smg1 coding upstream 31256 31118026 ~ 31158437 (-)
XLOC_026453 NA coding upstream 87363 31174133 ~ 31177209 (-)
XLOC_026454 syt17 coding upstream 114772 31201542 ~ 31226841 (-)
XLOC_026441 BX682556.2 non-coding downstream 280022 30800541 ~ 30800658 (-)
XLOC_026439 NA non-coding downstream 384390 30694877 ~ 30696290 (-)
XLOC_026432 NA non-coding downstream 878849 30199036 ~ 30201831 (-)
XLOC_026427 NA non-coding downstream 1041531 30036697 ~ 30039149 (-)
XLOC_026457 NA non-coding upstream 424700 31511470 ~ 31600282 (-)
XLOC_026460 NA non-coding upstream 563483 31650253 ~ 31650711 (-)
XLOC_026469 NA non-coding upstream 848927 31935697 ~ 31957366 (-)

Expression


Co-expression Network