XLOC_026450


Basic Information

Item Value
gene id XLOC_026450
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31093212 ~ 31093764 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053052
CTGCATGTTTTTCATCGTTTATGCAACATGGTTGAGGATAACAcgcttcctcctcctcttcttccttcTTCACAAAAGCCATCTTTAACAGTTACAGTAGCAGATCTTACTTTTGTAGTTACACGTGGATATATTAACGTTATATACACGCTATTTTTAGTTTTAGTCCTTATCTGTATCTTTCTGGTTTAAGATAAACCTGTCGGTGTAGGTAAAACAACAGGTATTACAAAGTTTACGttacaaaataatcacaaaatataCATGAAGTCAAACAAACCGCGCGCACGTACTCCCTTTTCTTCTGTGTAACAGCTTCTTAACAGCAGCTCGCAAGCGCAAACAGCgcattaccgccacctactgttAGCATGAACCACACTGCACCTTTCAAATGAtagtttttattacaaaacatgaaacatttacaaacacagaGCTATTACAGTAAGCATATGTTAAAGTAACATGCATATGCTTTTCTTATtagtaaacaaatacatttttgtatcGGTGTCTCTGGTCCATAAAAACCATAAATGtcttaaatgta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053052 True 553 lncRNA 0.36 1 31093212 31093764

Neighbor

gene id symbol gene type direction distance location
XLOC_026449 zgc:153292 coding downstream 6442 31080680 ~ 31086770 (-)
XLOC_026448 elob coding downstream 13966 31063206 ~ 31079246 (-)
XLOC_026446 NA coding downstream 34922 31041952 ~ 31058290 (-)
XLOC_026447 armc5 coding downstream 35588 31042585 ~ 31057624 (-)
XLOC_026445 si:dkeyp-71f10.5 coding downstream 73380 30998362 ~ 31019832 (-)
XLOC_026451 arl6ip1 coding upstream 11127 31104891 ~ 31115996 (-)
XLOC_026452 smg1 coding upstream 24262 31118026 ~ 31158437 (-)
XLOC_026453 NA coding upstream 80369 31174133 ~ 31177209 (-)
XLOC_026454 syt17 coding upstream 107778 31201542 ~ 31226841 (-)
XLOC_026455 apnl coding upstream 156121 31249885 ~ 31254979 (-)
XLOC_026441 BX682556.2 non-coding downstream 292554 30800541 ~ 30800658 (-)
XLOC_026439 NA non-coding downstream 396922 30694877 ~ 30696290 (-)
XLOC_026432 NA non-coding downstream 891381 30199036 ~ 30201831 (-)
XLOC_026427 NA non-coding downstream 1054063 30036697 ~ 30039149 (-)
XLOC_026457 NA non-coding upstream 417706 31511470 ~ 31600282 (-)
XLOC_026460 NA non-coding upstream 556489 31650253 ~ 31650711 (-)
XLOC_026469 NA non-coding upstream 841933 31935697 ~ 31957366 (-)
XLOC_026474 NA non-coding upstream 1092135 32185899 ~ 32222085 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_02927711_02933564 NA coding CI01000069 null 2927437 ~ 2933579 (+)